Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BS11774_RS15135 Genome accession   NZ_CP026010
Coordinates   2872273..2873523 (+) Length   416 a.a.
NCBI ID   WP_128473917.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2867273..2878523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS15105 (BS11774_15035) ymfH 2867363..2868649 (+) 1287 WP_003244823.1 pitrilysin family protein -
  BS11774_RS15110 (BS11774_15040) efpI 2868704..2869432 (+) 729 WP_017694896.1 EF-P-5 aminopentanone reductase -
  BS11774_RS15115 (BS11774_15045) ymfJ 2869513..2869770 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  BS11774_RS15120 (BS11774_15050) - 2869900..2870691 (+) 792 WP_003220998.1 YmfK family protein -
  BS11774_RS15125 (BS11774_15055) rodZ 2870758..2871624 (+) 867 WP_250540174.1 cell shape determination protein RodZ -
  BS11774_RS15130 (BS11774_15060) pgsA 2871674..2872255 (+) 582 WP_128473916.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BS11774_RS15135 (BS11774_15065) cinA 2872273..2873523 (+) 1251 WP_128473917.1 competence/damage-inducible protein A Machinery gene
  BS11774_RS15140 (BS11774_15070) recA 2873696..2874742 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  BS11774_RS15145 (BS11774_15075) pbpX 2874910..2876085 (+) 1176 WP_128473918.1 serine hydrolase domain-containing protein -
  BS11774_RS15150 (BS11774_15080) rny 2876361..2877923 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45552.81 Da        Isoelectric Point: 5.1474

>NTDB_id=264997 BS11774_RS15135 WP_128473917.1 2872273..2873523(+) (cinA) [Bacillus subtilis strain ATCC 11774]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANYFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASTLFAGGVVCYTNDVKQNVLG
VKKDTLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=264997 BS11774_RS15135 WP_128473917.1 2872273..2873523(+) (cinA) [Bacillus subtilis strain ATCC 11774]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATT
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAACATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGACACGTTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.038

100

0.99
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375

Multiple sequence alignment