Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV447_RS21600 Genome accession   NZ_CP031256
Coordinates   4199217..4199822 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain M16807     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4194217..4204822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV447_RS21575 aes 4194358..4195317 (+) 960 WP_000801819.1 acetyl esterase -
  DV447_RS21580 hemH 4195314..4196276 (-) 963 WP_001250114.1 ferrochelatase -
  DV447_RS21585 adk 4196408..4197052 (-) 645 WP_001313630.1 adenylate kinase -
  DV447_RS21595 htpG 4197233..4199107 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  DV447_RS21600 recR 4199217..4199822 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DV447_RS21605 ybaB 4199822..4200151 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DV447_RS21610 dnaX 4200204..4202135 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  DV447_RS21615 apt 4202264..4202815 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DV447_RS21625 ybaN 4202968..4203345 (-) 378 WP_001188900.1 DUF454 family protein -
  DV447_RS21630 priC 4203415..4203942 (+) 528 WP_000858961.1 primosomal replication protein N'' -
  DV447_RS21635 rsmS 4203956..4204117 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  DV447_RS27355 - 4204170..4204268 (-) 99 Protein_3970 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=263901 DV447_RS21600 WP_001195025.1 4199217..4199822(-) (recR) [Escherichia coli strain M16807]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=263901 DV447_RS21600 WP_001195025.1 4199217..4199822(-) (recR) [Escherichia coli strain M16807]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment