Detailed information NTG0263899

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C1S76_RS14235
• Genome accession: NZ_CP025796
• Coordinates: 2958355..2959224 (-)
• Length: 289 a.a.
• NCBI ID: WP_045413056.1
• Uniprot ID: -
• Organism: Vibrio owensii strain 051011B
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2953355..2964224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1S76_RS14200	rpsP	2954259..2954507 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
C1S76_RS14205	rimM	2954538..2955086 (+)	549	WP_005438038.1	ribosome maturation factor RimM	-
C1S76_RS14210	trmD	2955114..2955857 (+)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
C1S76_RS14215	rplS	2955899..2956252 (+)	354	WP_005438036.1	50S ribosomal protein L19	-
C1S76_RS14220	yacG	2956715..2956909 (-)	195	WP_009707573.1	DNA gyrase inhibitor YacG	-
C1S76_RS14225	zapD	2956972..2957712 (-)	741	WP_009707572.1	cell division protein ZapD	-
C1S76_RS14230	coaE	2957740..2958354 (-)	615	WP_045413058.1	dephospho-CoA kinase	-
C1S76_RS14235	pilD	2958355..2959224 (-)	870	WP_045413056.1	prepilin peptidase	Machinery gene
C1S76_RS14240	pilC	2959297..2960520 (-)	1224	WP_009707569.1	type II secretion system F family protein	Machinery gene
C1S76_RS14245	pilB	2960554..2962239 (-)	1686	WP_045413053.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C1S76_RS14250	-	2962243..2962683 (-)	441	WP_045413051.1	type IV pilin protein	-
C1S76_RS14260	nadC	2962948..2963835 (-)	888	WP_039840279.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32593.79 Da
• Isoelectric Point: 7.8754

>NTDB_id=263899 C1S76_RS14235 WP_045413056.1 2958355..2959224(-) (pilD) [Vibrio owensii strain 051011B]
MEVFQYYPWLFVVFATVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEKLTLSVPRSSCQQCGTQIRIR
DNIPVISWLLLRGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALSGISPVSLQDSVIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=263899 C1S76_RS14235 WP_045413056.1 2958355..2959224(-) (pilD) [Vibrio owensii strain 051011B]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACGGTTTTCGGTTTGATCGTGGGTAGTTTCCTCAA
CGTTGTTATTTATCGATTACCCAAAATCATGGAATTAGAGTGGCGACGCGAATGCGCGGAATCGTTCCCTGAATACAAAA
TAGAACCACCAAAAGAGAAGCTGACATTAAGCGTACCACGCTCATCTTGTCAGCAATGTGGCACGCAAATTCGTATTCGT
GACAATATCCCAGTGATTAGTTGGCTTCTTCTGCGCGGTAAATGCCACAACTGCCAATCTCCTATCAGTGCACGCTACCC
TCTTATCGAACTGCTTACTGCCTTTTGTTCGGGTTTTATCGCTTTTCACTTCGGTTTTAGCTACTTCACTGTCGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCCGCCACGTTTATCGATCTCGATACCATGTTGTTGCCAGACCAGCTTACATTGCCA
TTAATGTGGGCAGGTATTGCGCTCGCACTTTCTGGTATCAGTCCTGTGAGCCTACAAGATTCCGTCATTGGTGCAATGGC
AGGTTATCTGTGTCTTTGGAGTGTTTACTGGTTGTTTAAGCTCCTTACAGGCAAAGAAGGCATGGGTTATGGTGACTTTA
AACTCCTTGCCGCATTAGGTGCTTGGTTGGGTTGGCAATCGCTACCGATGATCATTCTGCTTTCATCAGTAGTGGGCGTC
ATCTTTGGTCTTATCCAACTGCGTTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCAATTGC
GGGATGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.578	100	0.976
pilD	Vibrio cholerae strain A1552	76.042	99.654	0.758
pilD	Acinetobacter baumannii D1279779	52.92	94.81	0.502
pilD	Acinetobacter nosocomialis M2	52.92	94.81	0.502
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443