Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C1S76_RS11300 Genome accession   NZ_CP025796
Coordinates   2389562..2390671 (+) Length   369 a.a.
NCBI ID   WP_045416815.1    Uniprot ID   -
Organism   Vibrio owensii strain 051011B     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2384562..2395671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS11280 rsmB 2385480..2386763 (-) 1284 WP_005440762.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  C1S76_RS11285 fmt 2386846..2387793 (-) 948 WP_038896195.1 methionyl-tRNA formyltransferase -
  C1S76_RS11290 def 2387827..2388345 (-) 519 WP_033006323.1 peptide deformylase -
  C1S76_RS11295 - 2388484..2389578 (+) 1095 WP_045416813.1 LysM peptidoglycan-binding domain-containing protein -
  C1S76_RS11300 dprA 2389562..2390671 (+) 1110 WP_045416815.1 DNA-processing protein DprA Machinery gene
  C1S76_RS11305 - 2390674..2391153 (+) 480 WP_005429833.1 DUF494 family protein -
  C1S76_RS11310 - 2391176..2391745 (+) 570 WP_009708006.1 type I DNA topoisomerase -
  C1S76_RS11315 - 2391810..2392943 (-) 1134 WP_045416818.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  C1S76_RS11320 purE 2392948..2393433 (-) 486 WP_045416821.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  C1S76_RS11325 - 2393634..2394191 (+) 558 WP_045416825.1 L-threonylcarbamoyladenylate synthase -
  C1S76_RS11330 hemF 2394226..2395143 (+) 918 WP_045416827.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39404.18 Da        Isoelectric Point: 6.4979

>NTDB_id=263882 C1S76_RS11300 WP_045416815.1 2389562..2390671(+) (dprA) [Vibrio owensii strain 051011B]
MKPHNDTDLAAWLKLSCLPGIGGVKLSKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSKVDKEVDACLTWAAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGDVSCLSQPQIAMVGSRNASVDGLQHARSFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLAKRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRNGACLVQSTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=263882 C1S76_RS11300 WP_045416815.1 2389562..2390671(+) (dprA) [Vibrio owensii strain 051011B]
ATGAAACCACACAATGATACGGATCTCGCCGCCTGGTTAAAGCTGAGTTGCTTGCCAGGTATTGGCGGGGTCAAGCTGAG
TAAGCTGCTGAGCAAAGACACGCCGAGTAATATTGTCCAATATTCCACGGAGCAGCTTCAGCTTTTAGGCTTAACAGCAA
AACAACTGCAAGCGTGGTCGAAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGCTGCTGCATCTTCTCATCATCAT
ATTCTTACTTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTATTATTCGTAAAGGG
CGACGTGAGTTGCTTGTCTCAGCCACAAATTGCCATGGTTGGCAGTCGTAATGCCAGTGTGGATGGACTACAACATGCAA
GAAGTTTTGCATCAGACTTGGTGCAACACGATCTGATCGTCACCAGTGGTTTGGCATTAGGTATTGATGGTCATGCTCAT
GATGGCGCGCTTTTAGCTGGCGGTAAAACCATCGCAGTGCTTGGTTCTGGGTTGGAACAAGTGTATCCAGCAAGACACCG
AGGTTTAGCGAAACGAGTGATGGAAAATGGTGCGCTTGTTTCTGAGTTTCGTCCAGATGCTAAGCCTCGTGCAGAAAACT
TCCCTCGTCGTAATCGAATTATTAGTGGTTTGTCGCTGGGTGTTTTGGTAGTGGAAGCGGCTGAAAAAAGTGGTTCCTTA
ATCACTGCACGCTATGCTCTTGAGCAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCTCCTAACGCCAGTGG
CGGTAATCAATTGATTCGTAACGGAGCTTGCCTCGTACAAAGTACCCAAGAGGTGCTGAATGAAATACAGTCTTTACTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

95.664

100

0.957
  dprA Vibrio cholerae strain A1552

58.919

100

0.591
  dprA Glaesserella parasuis strain SC1401

47.733

100

0.485
  dprA Legionella pneumophila strain ERS1305867

44.598

97.832

0.436
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Neisseria meningitidis strain C311

37.34

100

0.396
  dprA Neisseria meningitidis MC58

37.34

100

0.396
  dprA Neisseria gonorrhoeae MS11

36.434

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

36.176

100

0.379

Multiple sequence alignment