Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SFRI_RS19430 Genome accession   NC_008345
Coordinates   4505817..4507076 (+) Length   419 a.a.
NCBI ID   WP_011639198.1    Uniprot ID   Q07WK3
Organism   Shewanella frigidimarina NCIMB 400     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4500817..4512076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFRI_RS19415 (Sfri_3781) nadC 4501586..4502464 (+) 879 WP_011639195.1 carboxylating nicotinate-nucleotide diphosphorylase -
  SFRI_RS21815 (Sfri_3782) pilE 4503482..4503910 (+) 429 WP_049763611.1 pilin Machinery gene
  SFRI_RS19425 (Sfri_3783) pilB 4504003..4505709 (+) 1707 WP_011639197.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SFRI_RS19430 (Sfri_3784) pilC 4505817..4507076 (+) 1260 WP_011639198.1 type II secretion system F family protein Machinery gene
  SFRI_RS19435 (Sfri_3785) pilD 4507106..4508032 (+) 927 WP_011639199.1 A24 family peptidase Machinery gene
  SFRI_RS19440 (Sfri_3786) coaE 4508029..4508658 (+) 630 WP_011639200.1 dephospho-CoA kinase -
  SFRI_RS19445 (Sfri_3787) zapD 4508651..4509385 (+) 735 WP_011639201.1 cell division protein ZapD -
  SFRI_RS19450 (Sfri_3788) yacG 4509428..4509640 (+) 213 WP_041413247.1 DNA gyrase inhibitor YacG -
  SFRI_RS19455 (Sfri_3789) mutT 4509664..4510059 (+) 396 WP_011639203.1 8-oxo-dGTP diphosphatase MutT -
  SFRI_RS21395 (Sfri_3790) - 4510374..4510973 (-) 600 Protein_3776 transposase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46260.50 Da        Isoelectric Point: 10.2865

>NTDB_id=26351 SFRI_RS19430 WP_011639198.1 4505817..4507076(+) (pilC) [Shewanella frigidimarina NCIMB 400]
MATITAKKKPKAKKKTKHQPKVFTYQWKGVNRDGQRTSGELKGSTIAEIRSVLKAQGVTPKGVRKKSAPLWKTEKSITAM
DIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGTILSDVQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGSL
DAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVAIAVTSLLLLFVVPQFEDIFNGFGAELPAFTQMIIGISRWLQSSWY
FFVIAIVIGIWLFRRTHRNSQSFRDRIDQMVLKIPVIGDILHKASMSRFARTLSTTFAAGVPLIDGLESAAGASGNYVYR
KALLKVRQEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDEMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTL
VGGLIVGMYLPIFEMGNVV

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=26351 SFRI_RS19430 WP_011639198.1 4505817..4507076(+) (pilC) [Shewanella frigidimarina NCIMB 400]
ATGGCCACAATAACAGCAAAGAAAAAGCCAAAGGCGAAAAAAAAAACCAAACACCAACCTAAGGTTTTTACTTACCAATG
GAAGGGTGTTAATCGTGATGGTCAACGTACTTCTGGTGAGTTGAAAGGATCCACGATTGCTGAAATCCGTAGTGTGTTAA
AAGCACAAGGTGTCACCCCTAAAGGGGTGCGTAAAAAGTCGGCGCCTTTATGGAAAACAGAAAAAAGTATTACCGCAATG
GATATTGCGATGATTACCCGCCAAATAGCTACCATGCTTGCTGCTGGTGTCCCATTAGTCACAACTATTGAACTTCTTGG
CCGTGGCCATGAAAAAGCTAAAGTCCGAGAATTACTGGGTACTATTTTATCCGATGTCCAATCAGGTATTCCACTTTCAG
ATGCACTAAGACCTCACCGACGATATTTTGATGATTTATATGTCGATTTAGTCGCTGCTGGCGAACATTCTGGCTCACTC
GATGCCGTGTTTGATCGTATCGCAACTTATCGTGAAAAAGCTGAACAATTAAAATCTAAAATTAAAAAAGCGATGTTCTA
TCCTGCTGCTGTCGTAGTTGTAGCAATTGCTGTTACGTCGTTATTGTTGCTTTTTGTTGTGCCCCAATTTGAAGATATAT
TTAATGGCTTCGGTGCAGAATTACCGGCATTTACTCAAATGATTATTGGTATCTCGCGCTGGTTACAAAGCTCATGGTAC
TTCTTTGTAATAGCTATTGTTATCGGGATCTGGCTTTTTAGACGAACTCATCGTAATTCTCAAAGTTTTCGCGACCGAAT
TGACCAAATGGTACTGAAGATACCCGTGATTGGTGACATTCTTCACAAAGCGTCTATGTCGCGTTTTGCTCGAACCTTAT
CAACAACCTTTGCTGCAGGCGTACCATTAATTGATGGTTTAGAGTCTGCCGCGGGTGCTTCTGGTAACTATGTGTACCGT
AAAGCACTATTAAAGGTTCGCCAAGAAGTGATGTCGGGTATGCAGATGAATGTTGCCATGCGCACCACTGGCTTATTTCC
AGACATGCTGATTCAAATGGTGATGATTGGTGAAGAATCGGGTGGTTTGGATGAAATGCTTAATAAAGTGGCTAACATAT
ACGAAATGCAAGTTGATGATGCGGTTGATGGTTTATCCAGTTTAATAGAACCCATCATGATGGTAGTCATTGGTACTCTG
GTTGGAGGCCTTATTGTTGGTATGTATTTGCCTATTTTCGAAATGGGTAACGTTGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(86-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q07WK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.922

97.375

0.525
  pilC Acinetobacter baylyi ADP1

49.512

97.852

0.484
  pilC Acinetobacter baumannii D1279779

49.268

97.852

0.482
  pilC Legionella pneumophila strain ERS1305867

48.515

96.42

0.468
  pilC Vibrio cholerae strain A1552

46.599

94.749

0.442
  pilC Vibrio campbellii strain DS40M4

44.389

95.704

0.425
  pilG Neisseria meningitidis 44/76-A

40.547

95.943

0.389
  pilG Neisseria gonorrhoeae MS11

40.547

95.943

0.389

Multiple sequence alignment