Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   C0J00_RS01450 Genome accession   NZ_CP025536
Coordinates   278719..280692 (+) Length   657 a.a.
NCBI ID   WP_104967228.1    Uniprot ID   A0A2L0D229
Organism   Streptococcus pluranimalium strain TH11417     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 273719..285692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J00_RS01430 (C0J00_01430) - 273788..275023 (+) 1236 WP_104967224.1 cysteine desulfurase -
  C0J00_RS01435 (C0J00_01435) sufU 275001..275441 (+) 441 WP_104967225.1 Fe-S cluster assembly sulfur transfer protein SufU -
  C0J00_RS01440 (C0J00_01440) sufB 275683..277092 (+) 1410 WP_104967226.1 Fe-S cluster assembly protein SufB -
  C0J00_RS01445 (C0J00_01445) pbp3 277284..278513 (-) 1230 WP_104967227.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  C0J00_RS01450 (C0J00_01450) amiA 278719..280692 (+) 1974 WP_104967228.1 peptide ABC transporter substrate-binding protein Regulator
  C0J00_RS01455 (C0J00_01455) amiC 280758..282257 (+) 1500 WP_104967229.1 ABC transporter permease Regulator
  C0J00_RS01460 (C0J00_01460) amiD 282257..283183 (+) 927 WP_104967230.1 oligopeptide ABC transporter permease OppC Regulator
  C0J00_RS01465 (C0J00_01465) amiE 283192..284241 (+) 1050 WP_104967231.1 ABC transporter ATP-binding protein Regulator
  C0J00_RS01470 (C0J00_01470) amiF 284256..285185 (+) 930 WP_104967232.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 73186.88 Da        Isoelectric Point: 4.4516

>NTDB_id=262334 C0J00_RS01450 WP_104967228.1 278719..280692(+) (amiA) [Streptococcus pluranimalium strain TH11417]
MTSKKKLLALAGVALVSTSVLAACGNKSDSKKSDSMSYSYVYATDPKTLDYVTANGAETSELTANFVDGLLENDQYGNLI
PSLAKDWTVSEDGLTYTYKLRDDVYWYTADGEEYAPVTAEDFVTGLKHAADKKSDALYVVQDSVKGLKDYVDGKEKDFKN
IGVKAVDEHTVEYTLNKPESFWNSKTTYGILFPVNAEFLESKGDDFGSPTDPSSLLYNGAYTLSAITSKSSVEMTKNENY
WDADNVHITDVKLTYYDGSDPDSLFNNFKDGSYSFARLYPNQPSFKKASKEFGDNIYYAQQNASTYMYFFNVNRTANKMT
EKSPEQFEDTKEALQNKDFRQAVTFAFDRASWNSQVAGEEAKDKALRNTLVPPTFVQIDGKDFGDTVTKDLETLGDEWQG
VNLKDAQNGLYDPEKAKAELEKAKADLGSDVSYPIQIDTVVSQTDELGVQRAKSLKQSIESNLGKENVQINILEKSEEEY
LAATYNAESAEQMDYDITISGWSPDYLDPSSYLDIFSTAEGAASTMRLGIDSKNTELVQKVGLDKYQEHLDKASDITDDV
NARYTEYAKAQAWLSDSALVIPTISLGGTPGVTRIQPFTAPFSWVGNKGGTYIYKYQKVQDKPVTTSDYEKALEKWKTKR
DKSNEKATKELADHVAK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=262334 C0J00_RS01450 WP_104967228.1 278719..280692(+) (amiA) [Streptococcus pluranimalium strain TH11417]
ATGACAAGTAAAAAGAAATTATTGGCATTAGCCGGTGTAGCACTTGTTTCTACATCCGTTTTAGCAGCTTGTGGTAATAA
ATCAGATTCAAAGAAATCAGATAGTATGTCATATAGCTATGTGTATGCAACAGATCCAAAGACTTTGGACTATGTAACTG
CCAATGGGGCAGAAACTAGTGAGCTTACTGCTAACTTTGTGGATGGTCTTTTAGAAAATGATCAATACGGAAATCTTATT
CCATCGTTGGCAAAAGACTGGACTGTTTCTGAAGACGGTTTAACTTATACTTATAAACTCCGTGATGATGTCTACTGGTA
TACTGCTGATGGTGAAGAATATGCTCCAGTTACAGCTGAAGACTTCGTAACAGGTCTAAAACATGCAGCAGATAAAAAAT
CTGATGCTCTCTATGTTGTCCAAGATTCTGTTAAAGGATTGAAAGACTACGTTGATGGAAAAGAAAAAGACTTTAAAAAC
ATAGGTGTTAAAGCAGTTGATGAGCACACTGTTGAGTATACGCTTAATAAACCTGAAAGTTTCTGGAACTCTAAAACTAC
TTATGGTATTCTTTTCCCAGTCAATGCAGAATTCTTAGAATCAAAAGGTGATGATTTTGGTTCGCCAACTGATCCATCAA
GTCTTTTGTATAATGGTGCTTATACATTGAGTGCTATCACTTCTAAATCATCTGTAGAAATGACTAAAAACGAAAACTAC
TGGGATGCAGACAATGTTCACATCACAGATGTTAAGTTGACCTACTATGATGGTTCAGATCCTGATTCACTCTTTAATAA
CTTCAAAGATGGATCCTACAGTTTTGCCCGTCTCTATCCTAACCAACCAAGCTTCAAGAAAGCTTCTAAAGAGTTCGGCG
ACAACATCTACTATGCTCAACAAAATGCCTCAACTTACATGTACTTCTTCAATGTTAACCGTACAGCTAACAAAATGACG
GAAAAATCGCCAGAACAATTTGAAGATACGAAAGAAGCACTTCAAAACAAAGATTTCCGTCAAGCAGTTACCTTTGCCTT
TGACCGCGCGTCATGGAATTCTCAAGTAGCTGGTGAAGAAGCTAAAGATAAAGCCTTACGTAATACTCTCGTGCCACCGA
CATTTGTTCAAATTGATGGTAAAGACTTCGGAGATACTGTAACTAAAGATTTAGAAACACTTGGTGATGAGTGGCAAGGT
GTTAACCTTAAAGATGCTCAGAATGGTTTGTACGATCCAGAAAAAGCTAAAGCTGAGCTTGAAAAGGCTAAAGCAGATCT
AGGATCTGATGTGTCATACCCAATTCAAATCGATACAGTAGTATCTCAAACAGATGAGCTTGGCGTTCAACGTGCGAAAT
CGTTGAAACAATCTATTGAATCTAACTTGGGTAAAGAAAATGTTCAAATCAACATTCTTGAAAAATCTGAAGAAGAATAT
CTAGCAGCTACTTATAACGCTGAATCAGCAGAACAAATGGACTACGATATTACTATTTCAGGTTGGTCACCAGACTATCT
TGACCCATCTTCATACCTTGATATCTTCTCAACAGCAGAAGGTGCAGCATCAACAATGCGTCTAGGTATCGATTCTAAGA
ATACTGAGTTAGTCCAAAAAGTTGGCTTGGATAAATACCAAGAACACCTTGATAAAGCTTCTGACATTACTGACGATGTC
AATGCTCGTTACACTGAATATGCTAAAGCTCAAGCTTGGTTAAGTGATAGTGCTCTTGTTATCCCAACAATCTCACTTGG
TGGTACACCAGGAGTTACTCGTATTCAACCATTTACAGCACCATTCTCATGGGTCGGTAACAAAGGTGGAACTTACATTT
ACAAATATCAAAAAGTTCAAGACAAACCTGTTACAACAAGCGACTATGAAAAAGCTTTAGAAAAATGGAAAACTAAACGT
GACAAATCAAATGAAAAAGCTACAAAAGAATTAGCTGATCACGTTGCAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D229

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.446

100

0.514
  amiA3 Streptococcus thermophilus LMG 18311

50.989

100

0.51
  amiA3 Streptococcus thermophilus LMD-9

50.837

100

0.508

Multiple sequence alignment