Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   C0J00_RS01470 Genome accession   NZ_CP025536
Coordinates   284256..285185 (+) Length   309 a.a.
NCBI ID   WP_104967232.1    Uniprot ID   A0A2L0D2U2
Organism   Streptococcus pluranimalium strain TH11417     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 279256..290185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J00_RS01455 (C0J00_01455) amiC 280758..282257 (+) 1500 WP_104967229.1 ABC transporter permease Regulator
  C0J00_RS01460 (C0J00_01460) amiD 282257..283183 (+) 927 WP_104967230.1 oligopeptide ABC transporter permease OppC Regulator
  C0J00_RS01465 (C0J00_01465) amiE 283192..284241 (+) 1050 WP_104967231.1 ABC transporter ATP-binding protein Regulator
  C0J00_RS01470 (C0J00_01470) amiF 284256..285185 (+) 930 WP_104967232.1 ATP-binding cassette domain-containing protein Regulator
  C0J00_RS01475 (C0J00_01475) - 285487..287148 (+) 1662 WP_104967233.1 peptide ABC transporter substrate-binding protein -
  C0J00_RS01480 (C0J00_01480) - 287263..288177 (+) 915 WP_104967234.1 ABC transporter permease -
  C0J00_RS01485 (C0J00_01485) - 288188..289219 (+) 1032 WP_104967235.1 ABC transporter permease -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 34977.10 Da        Isoelectric Point: 5.3231

>NTDB_id=262338 C0J00_RS01470 WP_104967232.1 284256..285185(+) (amiF) [Streptococcus pluranimalium strain TH11417]
MSEKLVEIKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGDIFFEGEKINGKKSRE
KERELIRKIQMIFQDPAASLNERATIDYIISEGLHNFGLYDNEEDRKAKVRKMIDEVGLLPEHLTRYPHEFSGGQRQRIG
IARALVMRPDFVIADEPISALDVSVRAQVLNLLKELQKEFGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFR
NPIHPYTKSLLSAVPIPDPILERQKELVIYDPSQHDYDTEEPSMVELLPGHYVWGSPTEIAKYKLENPI

Nucleotide


Download         Length: 930 bp        

>NTDB_id=262338 C0J00_RS01470 WP_104967232.1 284256..285185(+) (amiF) [Streptococcus pluranimalium strain TH11417]
ATGTCAGAAAAATTAGTTGAAATCAAGGATTTAGAAATCTCCTTCGGTGAAGGGAAAAAGAAATTTGTAGCTGTGAAAAA
CGCCAACTTTTTCATCAATAAAGGAGAAACCTTCTCATTGGTTGGTGAATCTGGTTCAGGTAAGACAACTATCGGTCGTG
CCATTATTGGTTTAAATGATACTAGTGCTGGTGATATTTTCTTTGAAGGAGAAAAAATCAACGGGAAGAAATCTCGTGAA
AAAGAAAGAGAACTTATTCGGAAAATCCAGATGATTTTCCAAGATCCTGCGGCCAGTTTGAATGAACGTGCCACAATTGA
CTACATCATTTCAGAAGGGCTTCATAACTTTGGACTTTATGACAATGAAGAAGATCGTAAAGCGAAAGTTAGAAAAATGA
TCGATGAAGTTGGATTGTTGCCGGAGCACTTGACGCGTTACCCACATGAATTTTCAGGCGGACAACGACAACGTATCGGA
ATAGCTCGTGCCTTGGTTATGCGTCCTGACTTTGTCATTGCGGATGAACCTATTTCCGCCTTAGACGTTTCTGTTCGCGC
ACAGGTTTTGAACCTCTTAAAAGAACTCCAAAAAGAATTTGGTTTAACCTATCTTTTTATTGCCCATGATTTGTCAGTGG
TAAGATTTATTTCGGATCGTATTGCCGTTATCTATAAAGGTGTTATCGTCGAGGTTGCTGAAACGGAAGAATTATTCAGA
AATCCAATTCATCCATACACAAAATCATTGCTATCAGCAGTTCCTATCCCAGATCCAATCTTGGAAAGGCAAAAAGAGTT
GGTCATTTATGACCCAAGTCAGCATGATTATGACACTGAAGAACCAAGTATGGTCGAACTTCTTCCAGGGCATTATGTCT
GGGGAAGCCCAACAGAAATTGCCAAATATAAATTGGAAAACCCTATATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D2U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

81.046

99.029

0.803
  amiF Streptococcus thermophilus LMG 18311

80.392

99.029

0.796
  amiF Streptococcus thermophilus LMD-9

80.065

99.029

0.793

Multiple sequence alignment