Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   C0J00_RS01460 Genome accession   NZ_CP025536
Coordinates   282257..283183 (+) Length   308 a.a.
NCBI ID   WP_104967230.1    Uniprot ID   A0A2L0D2Q4
Organism   Streptococcus pluranimalium strain TH11417     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 277257..288183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J00_RS01445 (C0J00_01445) pbp3 277284..278513 (-) 1230 WP_104967227.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  C0J00_RS01450 (C0J00_01450) amiA 278719..280692 (+) 1974 WP_104967228.1 peptide ABC transporter substrate-binding protein Regulator
  C0J00_RS01455 (C0J00_01455) amiC 280758..282257 (+) 1500 WP_104967229.1 ABC transporter permease Regulator
  C0J00_RS01460 (C0J00_01460) amiD 282257..283183 (+) 927 WP_104967230.1 oligopeptide ABC transporter permease OppC Regulator
  C0J00_RS01465 (C0J00_01465) amiE 283192..284241 (+) 1050 WP_104967231.1 ABC transporter ATP-binding protein Regulator
  C0J00_RS01470 (C0J00_01470) amiF 284256..285185 (+) 930 WP_104967232.1 ATP-binding cassette domain-containing protein Regulator
  C0J00_RS01475 (C0J00_01475) - 285487..287148 (+) 1662 WP_104967233.1 peptide ABC transporter substrate-binding protein -
  C0J00_RS01480 (C0J00_01480) - 287263..288177 (+) 915 WP_104967234.1 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34853.94 Da        Isoelectric Point: 8.5817

>NTDB_id=262336 C0J00_RS01460 WP_104967230.1 282257..283183(+) (amiD) [Streptococcus pluranimalium strain TH11417]
MAQIDKNKFTFVELDTSAAEVIDSPAYSYWKSVFRQFFAKKSTLVMLIILVAIILMSFIYPMFANYDFKDVSNINDFSKR
FIWPNGEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINTVIGVIVGGIWGVSKSFDRIMLEIYNVISNIPFLLIVIV
LSYSIGAGFWNLIFAFCVTGWLGIAYSIRVQVLRYRDLEYNLASRTLGTPMTKVVLKNLLPQLVSVIMTLVSQMLPMYIS
FEAFLSFFGLGLPISEPSLGRLIANYSTYLTDNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=262336 C0J00_RS01460 WP_104967230.1 282257..283183(+) (amiD) [Streptococcus pluranimalium strain TH11417]
ATGGCTCAAATCGATAAAAATAAATTTACATTTGTAGAATTAGATACCTCAGCAGCTGAAGTGATTGATTCGCCAGCCTA
TTCTTACTGGAAGTCAGTTTTTCGTCAATTTTTCGCGAAAAAGTCAACGCTTGTCATGTTGATTATCTTAGTTGCTATCA
TTTTGATGAGTTTCATCTATCCTATGTTTGCAAACTATGATTTTAAAGATGTAAGTAATATTAACGATTTCTCTAAACGT
TTTATTTGGCCAAATGGTGAGTACTGGTTTGGAACAGACAAAAATGGTCAATCATTATTTGATGGCGTGTGGTATGGGGC
GAGAAACTCTATCTTAATCTCTGTTATTGCAACATTAATCAATACCGTTATTGGTGTTATTGTTGGCGGTATTTGGGGTG
TGTCTAAGAGTTTTGACCGTATTATGTTAGAAATCTATAATGTCATTTCAAATATCCCTTTCTTATTGATTGTCATTGTT
CTTTCATATTCTATCGGAGCAGGATTCTGGAATCTTATTTTCGCCTTCTGTGTCACGGGTTGGTTGGGGATAGCCTATAG
CATTCGTGTTCAAGTTCTCCGCTATCGCGACTTAGAATACAATTTGGCGAGTCGGACTTTAGGAACCCCAATGACGAAAG
TTGTCCTAAAAAACCTCTTGCCACAATTGGTGTCTGTTATCATGACCTTGGTCAGTCAAATGCTACCGATGTATATTTCT
TTTGAAGCTTTCTTGTCATTCTTTGGACTAGGTCTTCCAATTTCGGAGCCTAGCTTAGGTAGACTTATTGCTAATTATTC
GACTTATTTGACTGATAATGCTTATCTTTTCTGGATCCCACTAACGACCTTGATTTTGGTTTCTCTACCGCTCTATATTG
TTGGGCAAAATTTAGCGGATGCTAGTGATCCACGTTCGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D2Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

71.753

100

0.718
  amiD Streptococcus thermophilus LMD-9

71.753

100

0.718

Multiple sequence alignment