Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CXP47_RS26040 Genome accession   NZ_CP025309
Coordinates   5840852..5842069 (+) Length   405 a.a.
NCBI ID   WP_101283592.1    Uniprot ID   A0AAP9VSW3
Organism   Pseudomonas chlororaphis strain Lzh-T5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5835852..5847069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXP47_RS26025 (CXP47_26025) - 5836306..5839224 (+) 2919 WP_009050905.1 DUF748 domain-containing protein -
  CXP47_RS26030 (CXP47_26030) - 5839427..5839783 (-) 357 WP_009050906.1 BON domain-containing protein -
  CXP47_RS26035 (CXP47_26035) - 5840071..5840487 (-) 417 WP_009050907.1 pilin -
  CXP47_RS26040 (CXP47_26040) pilC 5840852..5842069 (+) 1218 WP_101283592.1 type II secretion system F family protein Machinery gene
  CXP47_RS26045 (CXP47_26045) pilD 5842072..5842944 (+) 873 WP_101283594.1 prepilin peptidase Machinery gene
  CXP47_RS26050 (CXP47_26050) coaE 5842941..5843564 (+) 624 WP_009045669.1 dephospho-CoA kinase -
  CXP47_RS26055 (CXP47_26055) yacG 5843561..5843764 (+) 204 WP_009045670.1 DNA gyrase inhibitor YacG -
  CXP47_RS26060 (CXP47_26060) - 5843769..5843984 (-) 216 WP_101283596.1 hypothetical protein -
  CXP47_RS26065 (CXP47_26065) - 5844050..5844739 (-) 690 WP_101283598.1 energy-coupling factor ABC transporter permease -
  CXP47_RS26070 (CXP47_26070) - 5844736..5845203 (-) 468 WP_009050913.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44439.23 Da        Isoelectric Point: 10.4090

>NTDB_id=260023 CXP47_RS26040 WP_101283592.1 5840852..5842069(+) (pilC) [Pseudomonas chlororaphis strain Lzh-T5]
MAVKAAKVSVYLWEGTDRQGSKLRGELSGHTPSLVRAQLRKQGISPARIRKKSSSLFQRTPPIKARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLLGELKQDIAAGSSFTSALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRIRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPVFTQLVIALSEFVQHWWWLLAGGLLLSVFGLR
HAHRRSPRFRQWLDVGLLKLPLVAPLMYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKHAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=260023 CXP47_RS26040 WP_101283592.1 5840852..5842069(+) (pilC) [Pseudomonas chlororaphis strain Lzh-T5]
ATGGCGGTCAAAGCAGCAAAAGTCAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGCGCGGCGAATT
GAGCGGCCATACCCCCTCGCTGGTCAGGGCCCAGTTGCGCAAGCAAGGCATCAGCCCGGCCAGGATCAGGAAGAAATCCA
GCTCGCTGTTCCAGCGCACGCCCCCGATCAAGGCTCGCGACATCAGCCTGTTCACCCGGCAGTTGGCGACCCTGATCAAG
GCCGGCGTACCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGATTCGATAACCCGAACATGCGCAAACTGCTGGGCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGCTTCACCAGCGCACTACGCAAGAGGCCGCGGTATTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGCGAGCAGGCCGGCGCCCTGGAAACCCTGCTGGAGCGGGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACCCGAATCCGCAAGGCCATGACCTATCCCCTGGCGGTGATCTGCGTGGCGCTGGTGGTCACGGGGAT
CCTGCTGGTCAAGGTGGTGCCGCAATTCCAGTCGATGTTCCAAGGCTTCGGCGCGCAACTGCCGGTGTTCACCCAACTGG
TCATCGCCCTCTCGGAGTTCGTGCAGCACTGGTGGTGGCTGTTGGCGGGCGGTCTGTTGCTCAGCGTGTTCGGCCTGCGC
CATGCCCACCGGCGCTCACCGCGCTTTCGCCAGTGGCTGGACGTGGGCCTGCTGAAACTGCCGTTGGTAGCGCCGCTGAT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGCACCTTGTCCACCACCTTCGCCGCCGGGGTACCACTGGTGGAGGCCCTGG
GCTCGGTGGCCGGGGCCACTGGCAACCAGGTGTTCAAGCATGCGGTGAACCGCATCAGGCAGGACGTGGCGACTGGCATG
CAGTTGCATTTTTCCATGCGCGCATCCGGCATTTTTCCCGGCATGGCGATCCAGATGACCGCCATCGGCGAAGAATCCGG
GGCCCTGGACGGCATGCTGGAAAAAGTCGCGATCCACTACGAGGAAGAGGTCGATACCCTGGTCGACACCCTGAGCAGTC
TCATGGAGCCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATCTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.926

100

0.659
  pilC Acinetobacter baylyi ADP1

56.127

100

0.565
  pilC Acinetobacter baumannii D1279779

55.147

100

0.556
  pilC Legionella pneumophila strain ERS1305867

52.273

97.778

0.511
  pilG Neisseria gonorrhoeae MS11

42.68

99.506

0.425
  pilG Neisseria meningitidis 44/76-A

41.935

99.506

0.417
  pilC Vibrio cholerae strain A1552

42.092

96.79

0.407
  pilC Vibrio campbellii strain DS40M4

39.552

99.259

0.393

Multiple sequence alignment