Detailed information NTG0260024

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CXP47_RS26045
• Genome accession: NZ_CP025309
• Coordinates: 5842072..5842944 (+)
• Length: 290 a.a.
• NCBI ID: WP_101283594.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain Lzh-T5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5837072..5847944

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXP47_RS26030 (CXP47_26030)	-	5839427..5839783 (-)	357	WP_009050906.1	BON domain-containing protein	-
CXP47_RS26035 (CXP47_26035)	-	5840071..5840487 (-)	417	WP_009050907.1	pilin	-
CXP47_RS26040 (CXP47_26040)	pilC	5840852..5842069 (+)	1218	WP_101283592.1	type II secretion system F family protein	Machinery gene
CXP47_RS26045 (CXP47_26045)	pilD	5842072..5842944 (+)	873	WP_101283594.1	prepilin peptidase	Machinery gene
CXP47_RS26050 (CXP47_26050)	coaE	5842941..5843564 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
CXP47_RS26055 (CXP47_26055)	yacG	5843561..5843764 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
CXP47_RS26060 (CXP47_26060)	-	5843769..5843984 (-)	216	WP_101283596.1	hypothetical protein	-
CXP47_RS26065 (CXP47_26065)	-	5844050..5844739 (-)	690	WP_101283598.1	energy-coupling factor ABC transporter permease	-
CXP47_RS26070 (CXP47_26070)	-	5844736..5845203 (-)	468	WP_009050913.1	hypothetical protein	-
CXP47_RS26075 (CXP47_26075)	-	5845659..5847095 (+)	1437	WP_009050914.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32080.24 Da
• Isoelectric Point: 7.9954

>NTDB_id=260024 CXP47_RS26045 WP_101283594.1 5842072..5842944(+) (pilD) [Pseudomonas chlororaphis strain Lzh-T5]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPISRRYPLVELTCGLASAFVAWHFGFGWQAVLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIALLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITGSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=260024 CXP47_RS26045 WP_101283594.1 5842072..5842944(+) (pilD) [Pseudomonas chlororaphis strain Lzh-T5]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAACCTGCCGGGCCGACCTACAACCTGCTGCTCCCGCATTCCCAGTGCCCTCACTGCGCACATTCGATCCGC
CCCTGGGAAAACATCCCGGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCACCGATCAGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGTCC
TGATGCTGCTGCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAGCTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTTTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGTGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCGGGGATCGCCCTGCTGCGCCGCAACCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.169	97.931	0.521
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter baumannii D1279779	51.273	94.828	0.486
pilD	Acinetobacter nosocomialis M2	50.545	94.828	0.479
pilD	Neisseria gonorrhoeae MS11	48.162	93.793	0.452