Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CXB48_RS05045 Genome accession   NZ_CP025149
Coordinates   1045808..1047025 (+) Length   405 a.a.
NCBI ID   WP_108241540.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain SGAir0442     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1040808..1052025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB48_RS05020 (CXB48_05010) - 1041223..1042053 (-) 831 WP_236082328.1 hypothetical protein -
  CXB48_RS05025 (CXB48_05015) - 1042055..1042864 (-) 810 WP_108241538.1 ABC transporter permease subunit -
  CXB48_RS05030 (CXB48_21585) - 1043085..1043534 (-) 450 WP_125482544.1 hypothetical protein -
  CXB48_RS21935 (CXB48_05020) pilV 1043548..1043736 (-) 189 WP_095460664.1 type IV pilin protein Machinery gene
  CXB48_RS05040 (CXB48_05025) pilB 1044102..1045805 (+) 1704 WP_108241539.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CXB48_RS05045 (CXB48_05030) pilC 1045808..1047025 (+) 1218 WP_108241540.1 type II secretion system F family protein Machinery gene
  CXB48_RS05050 (CXB48_05035) pilD 1047031..1047897 (+) 867 WP_095460667.1 prepilin peptidase Machinery gene
  CXB48_RS05055 (CXB48_05040) coaE 1048029..1048637 (+) 609 WP_080977605.1 dephospho-CoA kinase -
  CXB48_RS05060 (CXB48_05045) yacG 1048634..1048831 (+) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  CXB48_RS05065 (CXB48_05050) - 1048844..1049524 (-) 681 WP_013981946.1 energy-coupling factor ABC transporter permease -
  CXB48_RS05070 (CXB48_05055) - 1049581..1050621 (-) 1041 WP_108241541.1 NADP(H)-dependent aldo-keto reductase -
  CXB48_RS05075 (CXB48_05060) rplM 1051036..1051464 (+) 429 WP_015278003.1 50S ribosomal protein L13 -
  CXB48_RS05080 (CXB48_05065) rpsI 1051480..1051872 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44159.00 Da        Isoelectric Point: 9.8649

>NTDB_id=258671 CXB48_RS05045 WP_108241540.1 1045808..1047025(+) (pilC) [Stutzerimonas stutzeri strain SGAir0442]
MAEKALKTSVFTWEGTDRKGGKVKGELAGQSPALIKAQLRKQGINPLKVRKKAVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFESVFQGFGAELPAFTMMVVGLSRWLQEWWYLVAGALFAAAFLFK
HAYKRSEKFRDALDRLLLKAPIVGDILYKSVVARYARTLSTTFSAGVPLVDALDSVAGATGNVVFRNAVAKIRTDVSSGV
QLNFSMRTTGIFPSMAIQMTAIGEESGALDEMLDKLASFYEAEVDNMVDNLTTLMEPLIMAVLGVLVGGLIVAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=258671 CXB48_RS05045 WP_108241540.1 1045808..1047025(+) (pilC) [Stutzerimonas stutzeri strain SGAir0442]
ATGGCGGAAAAAGCGTTGAAAACCAGTGTGTTCACCTGGGAAGGCACCGACAGAAAAGGTGGCAAGGTCAAGGGGGAGCT
GGCAGGTCAGAGCCCAGCACTGATAAAGGCGCAGCTCCGCAAGCAGGGTATCAATCCGCTGAAGGTTCGCAAGAAGGCCG
TTTCCTTGTTCGGGGCGGGCAAGAAAATCAAGCCGATGGACATCGCTTTGTTTACTCGGCAAATGGCCACTATGATGAAG
GCGGGTGTGCCGTTGCTGCAGTCGTTCGATATCATTGGCGAGGGCTTCGATAATCCGAACATGCGTAAGCTGGTCGATGA
GATCAAGCAAGAAGTGGCAGCGGGCAACAGTTTTGCTGGCTCGCTACGCAAAAAACCGCAGTATTTCGATGACCTGTATT
GCAACTTGGTCGAGTCCGGAGAACAGTCCGGTGCGCTCGAAACGTTGCTGGACCGTGTCGCTACTTACAAGGAAAAAACC
GAGGCGCTCAAGGCTAAGATCAAGAAGGCAATGACCTACCCAATTGCGGTGATCGTTGTTGCCATCATTGTATCGGCGAT
TTTGCTGATCAAAGTGGTGCCTCAGTTCGAAAGTGTATTCCAAGGTTTCGGGGCAGAGCTGCCGGCTTTTACGATGATGG
TGGTAGGTCTATCCCGATGGCTGCAAGAGTGGTGGTATTTAGTAGCTGGAGCGCTGTTCGCGGCGGCGTTCCTTTTCAAG
CACGCCTATAAGCGGTCCGAAAAATTTCGCGATGCGCTCGATAGGTTGCTGCTTAAGGCCCCTATCGTTGGCGATATTTT
ATACAAATCTGTCGTCGCGCGTTATGCGCGTACGTTATCGACCACCTTCTCCGCTGGTGTGCCGCTTGTAGATGCTCTGG
ATTCAGTTGCGGGGGCCACGGGTAATGTGGTTTTCCGCAATGCGGTTGCGAAAATTCGTACCGATGTGTCATCTGGCGTG
CAGCTGAACTTTTCGATGCGCACGACAGGTATTTTCCCGTCGATGGCCATTCAAATGACGGCCATCGGCGAAGAATCCGG
AGCCCTAGATGAGATGCTCGACAAGCTGGCCAGTTTCTACGAGGCAGAGGTTGATAATATGGTGGACAACCTCACCACCT
TGATGGAACCGCTCATCATGGCCGTGCTCGGGGTTCTGGTGGGCGGCTTGATCGTCGCTATGTACCTTCCGATATTCCAG
CTCGGCTCTGTAGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

82.469

100

0.825
  pilC Acinetobacter baylyi ADP1

62.562

100

0.627
  pilC Acinetobacter baumannii D1279779

61.975

100

0.62
  pilC Legionella pneumophila strain ERS1305867

54.04

97.778

0.528
  pilG Neisseria gonorrhoeae MS11

45.522

99.259

0.452
  pilG Neisseria meningitidis 44/76-A

45.522

99.259

0.452
  pilC Vibrio cholerae strain A1552

43.21

100

0.432
  pilC Vibrio campbellii strain DS40M4

40.657

97.778

0.398

Multiple sequence alignment