Detailed information NTG0258672

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CXB48_RS05050
• Genome accession: NZ_CP025149
• Coordinates: 1047031..1047897 (+)
• Length: 288 a.a.
• NCBI ID: WP_095460667.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain SGAir0442
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1042031..1052897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXB48_RS05025 (CXB48_05015)	-	1042055..1042864 (-)	810	WP_108241538.1	ABC transporter permease subunit	-
CXB48_RS05030 (CXB48_21585)	-	1043085..1043534 (-)	450	WP_125482544.1	hypothetical protein	-
CXB48_RS21935 (CXB48_05020)	pilV	1043548..1043736 (-)	189	WP_095460664.1	type IV pilin protein	Machinery gene
CXB48_RS05040 (CXB48_05025)	pilB	1044102..1045805 (+)	1704	WP_108241539.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CXB48_RS05045 (CXB48_05030)	pilC	1045808..1047025 (+)	1218	WP_108241540.1	type II secretion system F family protein	Machinery gene
CXB48_RS05050 (CXB48_05035)	pilD	1047031..1047897 (+)	867	WP_095460667.1	prepilin peptidase	Machinery gene
CXB48_RS05055 (CXB48_05040)	coaE	1048029..1048637 (+)	609	WP_080977605.1	dephospho-CoA kinase	-
CXB48_RS05060 (CXB48_05045)	yacG	1048634..1048831 (+)	198	WP_041771656.1	DNA gyrase inhibitor YacG	-
CXB48_RS05065 (CXB48_05050)	-	1048844..1049524 (-)	681	WP_013981946.1	energy-coupling factor ABC transporter permease	-
CXB48_RS05070 (CXB48_05055)	-	1049581..1050621 (-)	1041	WP_108241541.1	NADP(H)-dependent aldo-keto reductase	-
CXB48_RS05075 (CXB48_05060)	rplM	1051036..1051464 (+)	429	WP_015278003.1	50S ribosomal protein L13	-
CXB48_RS05080 (CXB48_05065)	rpsI	1051480..1051872 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
CXB48_RS05085 (CXB48_05070)	petA	1052127..1052720 (+)	594	WP_013981949.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32093.02 Da
• Isoelectric Point: 7.2758

>NTDB_id=258672 CXB48_RS05050 WP_095460667.1 1047031..1047897(+) (pilD) [Stutzerimonas stutzeri strain SGAir0442]
MFIDLLASHVLAFVLSAAVLGLLVGSFLNVVIYRVPIMMQREWRMQAREYLEYPPEPIGERFNLLVPSSRCPHCGHRIRA
WENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQGGAMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIANNFTLFASLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 867 bp

>NTDB_id=258672 CXB48_RS05050 WP_095460667.1 1047031..1047897(+) (pilD) [Stutzerimonas stutzeri strain SGAir0442]
ATGTTTATTGATCTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAGCTT
TCTCAATGTCGTCATCTACCGTGTGCCGATCATGATGCAGCGCGAATGGCGCATGCAGGCGCGGGAATATTTGGAGTATC
CGCCCGAGCCAATTGGGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGTGCC
TGGGAGAACATTCCCTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCGATA
TCCGTTGGTTGAGCTGGCGTGTGGCGTGTTGTCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGGAGGGGCGA
TGCTTCTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTGCTG
CCGCTCTTGTGGTTAGGGTTGATTGCCAACAACTTTACTCTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGATAGC
CGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGATCACAGGCAAAGAGGGGATGGGCTACGGCGATTTCA
AGCTGCTGGCGATGCTTGGTGCCTGGGGCGGCTGGCAGGTTCTGCCGCTCACTATCTTGCTGTCTTCGGTGGTCGGCGCC
GTGCTTGGCAGTATTTTGCTGAGGGTGCAGCGGGCTGAAAGCAGTACGCCCATTCCGTTCGGGCCGTATCTGGCGATAGC
GGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGTTCGCTCGCTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.455	95.486	0.549
pilD	Vibrio campbellii strain DS40M4	57.143	94.792	0.542
pilD	Acinetobacter baumannii D1279779	51.799	96.528	0.5
pilD	Acinetobacter nosocomialis M2	51.799	96.528	0.5
pilD	Neisseria gonorrhoeae MS11	53.612	91.319	0.49