Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CW734_RS11070 Genome accession   NZ_CP025135
Coordinates   1941504..1942757 (-) Length   417 a.a.
NCBI ID   WP_101190497.1    Uniprot ID   -
Organism   Planococcus sp. MB-3u-03     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1936504..1947757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW734_RS11050 (CW734_11045) - 1936949..1937377 (-) 429 WP_058380497.1 RicAFT regulatory complex protein RicA family protein -
  CW734_RS11055 (CW734_11050) - 1937607..1938404 (-) 798 WP_058380496.1 TIGR00282 family metallophosphoesterase -
  CW734_RS11060 (CW734_11055) rny 1938473..1940032 (-) 1560 WP_058380495.1 ribonuclease Y -
  CW734_RS11065 (CW734_11060) recA 1940261..1941328 (-) 1068 WP_101190496.1 recombinase RecA Machinery gene
  CW734_RS11070 (CW734_11065) cinA 1941504..1942757 (-) 1254 WP_101190497.1 competence/damage-inducible protein A Machinery gene
  CW734_RS11075 (CW734_11070) pgsA 1942782..1943360 (-) 579 WP_101190498.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CW734_RS18310 - 1943410..1943553 (-) 144 WP_157824152.1 hypothetical protein -
  CW734_RS18480 - 1943745..1944119 (-) 375 WP_198551087.1 hypothetical protein -
  CW734_RS11085 (CW734_11080) - 1944049..1944264 (-) 216 WP_157824154.1 helix-turn-helix domain-containing protein -
  CW734_RS11090 (CW734_11085) - 1944282..1945082 (-) 801 WP_058380490.1 YmfK family protein -
  CW734_RS11095 (CW734_11090) - 1945173..1945892 (-) 720 WP_101190501.1 SDR family oxidoreductase -
  CW734_RS11100 (CW734_11095) - 1945889..1947187 (-) 1299 Protein_1961 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45296.31 Da        Isoelectric Point: 4.5700

>NTDB_id=258539 CW734_RS11070 WP_101190497.1 1941504..1942757(-) (cinA) [Planococcus sp. MB-3u-03]
MNAEIIAVGSELLLGQITNTNARFISGHLAEIGINVYYHTVVGDNPERLKETIAVAESRADLIIFSGGLGPTKDDLTKQT
IAHHLGTTLSMDDSAMESIAAFFERAGRPMTDNNKKQALVLAGSDVLVNENGMAPGMMYQNGDHMYMLLPGPPHELEPMF
QFEAKPKLVRMLNEENIILSHVLRFYGIGEAELEDRLQDILDKQTNPTIAPLASAGEVTLRITAKTDTTDEAWKLIDGAK
EEILERVGDYLYGYDDDSLASKAIDLLKQQGKTVSAAESLTAGLFQSELASVAGASAVLNGGVVTYNEQMKIQQLGMTQE
FFKEHSVVSEETAAAMASAVREKFNTDISVSLTGAAGPDAHGEEPAGTVWIGIASDEGTKAYRLQLSGMRNTNRIRAVKL
ALYYLIRTLADEDARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=258539 CW734_RS11070 WP_101190497.1 1941504..1942757(-) (cinA) [Planococcus sp. MB-3u-03]
ATGAACGCTGAAATTATCGCAGTTGGCTCGGAGCTCCTGCTCGGCCAAATCACCAATACGAACGCCCGCTTCATTTCGGG
GCATCTCGCTGAAATCGGGATCAATGTCTATTACCATACGGTTGTAGGCGACAATCCAGAGCGCTTGAAAGAAACGATCG
CTGTCGCAGAATCCCGTGCAGACCTGATCATCTTCTCCGGAGGGCTCGGACCGACGAAAGACGATTTGACAAAACAGACC
ATCGCCCACCATCTGGGCACGACGCTTTCGATGGACGATTCGGCGATGGAATCGATTGCTGCGTTTTTCGAACGTGCCGG
CCGCCCGATGACCGACAACAATAAAAAGCAGGCGCTAGTGCTTGCGGGCAGCGATGTGCTGGTCAATGAAAACGGCATGG
CACCGGGAATGATGTATCAAAACGGCGATCATATGTATATGCTGCTGCCTGGGCCGCCGCATGAATTGGAGCCGATGTTC
CAGTTCGAGGCGAAACCGAAATTGGTGCGCATGCTCAATGAGGAAAACATCATCCTTTCACATGTGCTGCGTTTTTACGG
CATCGGGGAAGCGGAACTTGAAGACCGCCTGCAGGATATTTTGGATAAGCAGACCAACCCGACGATTGCTCCGCTGGCAT
CCGCAGGTGAAGTCACGCTGCGCATCACGGCAAAAACGGACACCACGGATGAGGCGTGGAAATTGATCGACGGCGCAAAA
GAAGAAATCCTGGAGCGCGTCGGCGATTATCTGTATGGCTATGATGATGATTCTCTGGCATCGAAAGCCATCGATTTATT
GAAACAGCAAGGCAAAACGGTTTCGGCGGCAGAAAGCTTGACGGCTGGCCTGTTCCAGTCCGAGCTTGCTTCTGTCGCAG
GGGCGAGTGCTGTCTTGAATGGCGGCGTTGTCACCTATAACGAACAAATGAAAATCCAGCAGCTCGGCATGACACAAGAA
TTTTTCAAAGAGCATTCCGTCGTCAGCGAAGAAACGGCTGCAGCGATGGCTTCGGCTGTCCGAGAGAAATTCAATACCGA
TATCAGCGTCAGTTTGACCGGCGCGGCTGGGCCGGATGCACATGGCGAGGAACCGGCCGGAACGGTATGGATCGGCATCG
CGAGCGATGAAGGGACGAAAGCCTATCGCCTTCAGCTGTCAGGAATGAGGAACACAAACCGCATCCGTGCCGTGAAACTG
GCCTTGTACTATTTGATACGAACACTGGCAGATGAAGACGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.301

98.082

0.523
  cinA Streptococcus mutans UA159

45.652

99.281

0.453
  cinA Streptococcus mitis SK321

45.192

99.76

0.451
  cinA Streptococcus mitis NCTC 12261

44.712

99.76

0.446
  cinA Streptococcus pneumoniae Rx1

44.498

100

0.446
  cinA Streptococcus pneumoniae R6

44.498

100

0.446
  cinA Streptococcus pneumoniae TIGR4

44.471

99.76

0.444
  cinA Streptococcus pneumoniae D39

44.258

100

0.444
  cinA Streptococcus suis isolate S10

39.286

94.005

0.369

Multiple sequence alignment