Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   A7J09_RS09440 Genome accession   NZ_CP030015
Coordinates   1960091..1960753 (-) Length   220 a.a.
NCBI ID   WP_029178643.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1955091..1965753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS09420 (A7J09_09620) - 1955979..1956806 (-) 828 WP_002935354.1 hypothetical protein -
  A7J09_RS09425 (A7J09_09625) - 1956900..1957556 (-) 657 WP_002935353.1 CBS domain-containing protein -
  A7J09_RS09430 - 1957739..1957861 (-) 123 Protein_1833 IS982 family transposase -
  A7J09_RS09435 (A7J09_09630) comEC/celB 1957870..1960107 (-) 2238 WP_029178644.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A7J09_RS09440 (A7J09_09635) comEA/celA/cilE 1960091..1960753 (-) 663 WP_029178643.1 helix-hairpin-helix domain-containing protein Machinery gene
  A7J09_RS09445 (A7J09_09640) - 1960820..1961566 (-) 747 WP_029174959.1 lysophospholipid acyltransferase family protein -
  A7J09_RS09450 (A7J09_09645) - 1961713..1963158 (+) 1446 WP_029174960.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  A7J09_RS09455 (A7J09_09650) - 1963512..1964297 (+) 786 WP_014636900.1 ABC transporter ATP-binding protein -
  A7J09_RS09460 (A7J09_09655) - 1964310..1965239 (+) 930 WP_029178642.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23434.12 Da        Isoelectric Point: 4.0498

>NTDB_id=257992 A7J09_RS09440 WP_029178643.1 1960091..1960753(-) (comEA/celA/cilE) [Streptococcus suis strain ISU2812]
MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTGLTDFPQTEQTSSGQEQTEETSTEASEEPIQLVIDIK
GAVVKPGLYTLEADARVNDAVEAAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSQEEKSTSLVN
LNTATEADLQTISGIGAKRAADIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=257992 A7J09_RS09440 WP_029178643.1 1960091..1960753(-) (comEA/celA/cilE) [Streptococcus suis strain ISU2812]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCCGCAGTGGCTGGCTTGCT
AATGGCGACATTTTTAATCTTCAGTCAACCAGCCAAGTCTGACCAGACGGGTCTGACTGATTTTCCCCAGACCGAACAAA
CTTCAAGCGGTCAGGAGCAGACGGAGGAAACCAGTACAGAAGCAAGTGAAGAGCCTATCCAGCTGGTCATTGATATCAAA
GGAGCAGTAGTAAAACCAGGACTCTACACTTTAGAAGCTGATGCGCGTGTTAATGATGCAGTTGAAGCAGCTGGCGGCTT
GACCAGTCAGGCAGACCCCAAGTCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTGGTCTATGTGGCCAGCAAGG
ATGAAAATATCTCGGTGGTTGCCAGCACGACTGCCAGCTCTGCTATGTCCCAAGAAGAAAAAAGCACCAGTCTGGTCAAT
CTGAATACGGCGACTGAGGCTGACCTGCAGACCATTTCGGGTATCGGTGCCAAGCGGGCGGCGGACATTATCGCCTATCG
TGAGGCCAACGGTGGCTTCAAGTCGGTGGATGACCTCAACAATGTTTCGGGCATCGGCGACAAGACCATGGAAAGCATTC
GGCCTTATGTCACGGTCGATTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(157-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.032

99.545

0.468
  comEA/celA/cilE Streptococcus pneumoniae D39

47.032

99.545

0.468
  comEA/celA/cilE Streptococcus pneumoniae R6

47.032

99.545

0.468
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

46.789

99.091

0.464
  comEA/celA/cilE Streptococcus mitis SK321

45.291

100

0.459
  comEA Streptococcus thermophilus LMD-9

57.407

73.636

0.423
  comEA Lactococcus lactis subsp. cremoris KW2

39.171

98.636

0.386
  comEA Bacillus subtilis subsp. subtilis str. 168

40

95.455

0.382