Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SDEN_RS17605 Genome accession   NC_007954
Coordinates   4045495..4046763 (+) Length   422 a.a.
NCBI ID   WP_011497808.1    Uniprot ID   Q12IR0
Organism   Shewanella denitrificans OS217     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4040495..4051763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEN_RS17590 (Sden_3387) nadC 4041393..4042268 (+) 876 WP_011497805.1 carboxylating nicotinate-nucleotide diphosphorylase -
  SDEN_RS17595 (Sden_3388) - 4043125..4043541 (+) 417 WP_011497806.1 pilin -
  SDEN_RS17600 (Sden_3389) pilB 4043609..4045318 (+) 1710 WP_011497807.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SDEN_RS17605 (Sden_3390) pilC 4045495..4046763 (+) 1269 WP_011497808.1 type II secretion system F family protein Machinery gene
  SDEN_RS17610 (Sden_3391) pilD 4046921..4047838 (+) 918 WP_011497809.1 prepilin peptidase Machinery gene
  SDEN_RS17615 (Sden_3392) coaE 4047838..4048458 (+) 621 WP_011497810.1 dephospho-CoA kinase -
  SDEN_RS17620 (Sden_3393) zapD 4048468..4049211 (+) 744 WP_011497811.1 cell division protein ZapD -
  SDEN_RS17625 (Sden_3394) - 4049249..4049473 (+) 225 WP_011497812.1 DNA gyrase inhibitor YacG -
  SDEN_RS17630 (Sden_3395) mutT 4049482..4049877 (+) 396 WP_011497813.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45821.14 Da        Isoelectric Point: 10.2123

>NTDB_id=25721 SDEN_RS17605 WP_011497808.1 4045495..4046763(+) (pilC) [Shewanella denitrificans OS217]
MATASASKRPAKKKNDVKHQPKVFTFQWKGVNRDGQKTAGELRGTSISEIKGILKSQGVTPKGVNKKSAPLFKLFEPQIN
AMDTTMLTRQIATMLAAGVPLVTTLELLGRGHEKPKMRELLAIIIADVQSGIPLSNALRPHRRYFDDLYVDLVAAGEHSG
ALDLVFDRIAIYKEKAEALKSKIKKAMFYPAAVVVVAVAVTVLLLLFVVPQFEDIFAGFGAELPAFTQLVLGISRALQAS
WHVIFAAIGLAIFLFVRAHRSSQMVRDRVDEIVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKALLKVKQEVTSGMQMNVAMRTTNLFPDMLIQMVMIGEESGSLDNMLNKVSNIYEMQVDDAVDGLSSLIEPVMMVVIG
TLVGGLIVAMYLPIFQMGKIVS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=25721 SDEN_RS17605 WP_011497808.1 4045495..4046763(+) (pilC) [Shewanella denitrificans OS217]
ATGGCAACTGCCAGCGCAAGTAAAAGGCCTGCAAAAAAGAAAAATGATGTTAAGCATCAGCCTAAGGTGTTTACCTTTCA
GTGGAAAGGTGTAAATAGAGATGGTCAGAAAACCGCAGGTGAGCTACGTGGCACCAGTATCAGTGAAATCAAGGGCATAC
TCAAATCACAAGGGGTAACCCCCAAAGGGGTCAATAAAAAATCGGCCCCGTTATTTAAGCTGTTCGAGCCACAGATTAAT
GCCATGGATACCACCATGCTCACTCGCCAAATTGCAACTATGTTGGCCGCTGGCGTGCCCTTAGTCACCACTTTAGAACT
ATTAGGCCGTGGCCATGAAAAACCTAAAATGCGTGAACTCCTCGCCATTATCATCGCCGATGTGCAATCGGGTATTCCTC
TTTCTAATGCACTAAGACCCCACAGGCGCTATTTTGACGACCTCTATGTGGATTTAGTCGCAGCAGGCGAGCATTCTGGC
GCCTTAGATCTGGTGTTCGATCGCATCGCCATCTATAAAGAAAAAGCCGAGGCGCTCAAGTCAAAAATCAAGAAAGCCAT
GTTCTACCCCGCCGCCGTAGTTGTGGTTGCGGTGGCGGTCACTGTGTTACTCCTGCTATTCGTGGTGCCACAATTTGAAG
ATATTTTCGCCGGATTTGGCGCAGAACTGCCCGCATTTACCCAACTAGTACTGGGTATTTCACGTGCCTTGCAAGCCTCA
TGGCATGTTATTTTTGCTGCCATAGGGTTAGCGATTTTCTTGTTCGTGAGAGCACACAGAAGCTCGCAAATGGTGCGGGA
CAGAGTCGATGAAATAGTGCTTAAAATCCCCGCCATTGGCGATATTTTACATAAAGGCGCCATGGCGCGCTTTGCCCGTA
CCTTAGCCACCACCTTTGCGGCAGGTGTGCCATTAATCGATGGCTTAGAATCTGCCGCTGGCGCCTCCGGTAATGCCGTG
TATCGCAAGGCATTACTTAAAGTCAAGCAAGAAGTGACTTCAGGCATGCAGATGAATGTCGCCATGCGTACTACTAACCT
TTTCCCTGATATGCTCATTCAAATGGTGATGATAGGCGAAGAATCTGGTTCACTGGATAATATGCTCAACAAGGTGTCGA
ACATCTATGAAATGCAGGTGGATGATGCGGTGGATGGACTATCTAGTTTAATCGAACCTGTGATGATGGTGGTGATAGGC
ACTCTAGTTGGTGGCCTTATCGTTGCCATGTACCTACCTATCTTCCAAATGGGTAAAATTGTCAGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q12IR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.798

93.839

0.514
  pilC Acinetobacter baumannii D1279779

51.256

94.313

0.483
  pilC Acinetobacter baylyi ADP1

50.126

94.076

0.472
  pilC Legionella pneumophila strain ERS1305867

48.267

95.735

0.462
  pilC Vibrio cholerae strain A1552

46.582

93.602

0.436
  pilC Vibrio campbellii strain DS40M4

43.317

95.735

0.415
  pilG Neisseria meningitidis 44/76-A

41.337

95.735

0.396
  pilG Neisseria gonorrhoeae MS11

41.337

95.735

0.396

Multiple sequence alignment