Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPAG1_RS05740 Genome accession   NC_008086
Coordinates   1194260..1195309 (+) Length   349 a.a.
NCBI ID   WP_000115504.1    Uniprot ID   -
Organism   Helicobacter pylori HPAG1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1189260..1200309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAG1_RS05725 (HPAG1_1129) - 1190348..1191415 (-) 1068 WP_001144148.1 DUF874 family protein -
  HPAG1_RS05730 (HPAG1_1130) asd 1191843..1192883 (-) 1041 WP_000860912.1 aspartate-semialdehyde dehydrogenase -
  HPAG1_RS05735 (HPAG1_1131) hisS 1192870..1194198 (-) 1329 WP_000632462.1 histidine--tRNA ligase -
  HPAG1_RS05740 (HPAG1_1132) waaF 1194260..1195309 (+) 1050 WP_000115504.1 lipopolysaccharide heptosyltransferase II Regulator
  HPAG1_RS08335 - 1195501..1195665 (-) 165 WP_000744175.1 hypothetical protein -
  HPAG1_RS05750 (HPAG1_1134) fusA 1196244..1198322 (-) 2079 WP_000101846.1 elongation factor G -
  HPAG1_RS05755 (HPAG1_1135) rpsG 1198334..1198801 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  HPAG1_RS05760 (HPAG1_1136) rpsL 1198817..1199224 (-) 408 WP_001142322.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39492.30 Da        Isoelectric Point: 9.4536

>NTDB_id=25720 HPAG1_RS05740 WP_000115504.1 1194260..1195309(+) (waaF) [Helicobacter pylori HPAG1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFVLVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPIHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETSPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEVARTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=25720 HPAG1_RS05740 WP_000115504.1 1194260..1195309(+) (waaF) [Helicobacter pylori HPAG1]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTGTCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAGCTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAATGGCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCATTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCGCAAACCCCTTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCCTATAAAGCTCAAAAAGCGATCGTATTAAACCACCATTTAAGCTGTGCACCTTGTAAAAAGCGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGTATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGTCGCTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.304

97.994

0.375

Multiple sequence alignment