Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CSW12_RS08875 Genome accession   NZ_CP024655
Coordinates   1674980..1676218 (+) Length   412 a.a.
NCBI ID   WP_065229238.1    Uniprot ID   A0AAN6BA17
Organism   Bacillus cereus strain MLY1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1669980..1681218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSW12_RS08845 (CSW12_08865) yfmH 1670036..1671322 (+) 1287 WP_000411277.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  CSW12_RS08850 (CSW12_08870) ymfI 1671423..1672136 (+) 714 WP_000759626.1 elongation factor P 5-aminopentanone reductase -
  CSW12_RS08855 (CSW12_08875) - 1672212..1672460 (+) 249 WP_000114444.1 DUF3243 domain-containing protein -
  CSW12_RS08860 (CSW12_08880) - 1672599..1673384 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  CSW12_RS08865 (CSW12_08885) - 1673406..1674317 (+) 912 WP_000137474.1 helix-turn-helix domain-containing protein -
  CSW12_RS08870 (CSW12_08890) pgsA 1674381..1674959 (+) 579 WP_001052977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CSW12_RS08875 (CSW12_08895) cinA 1674980..1676218 (+) 1239 WP_065229238.1 competence/damage-inducible protein A Machinery gene
  CSW12_RS08880 (CSW12_08900) recA 1676363..1677394 (+) 1032 WP_001283854.1 recombinase RecA Machinery gene
  CSW12_RS08890 (CSW12_08910) rny 1677878..1679443 (+) 1566 WP_000099769.1 ribonuclease Y -
  CSW12_RS08895 (CSW12_08915) - 1679606..1680400 (+) 795 WP_001221097.1 TIGR00282 family metallophosphoesterase -
  CSW12_RS08900 (CSW12_08920) spoVS 1680550..1680810 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45481.82 Da        Isoelectric Point: 5.6841

>NTDB_id=254822 CSW12_RS08875 WP_065229238.1 1674980..1676218(+) (cinA) [Bacillus cereus strain MLY1]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IATSLDEKLVYDEKALDLISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDLLKADIGISFTGVAGPDASEQKEPGTVFVGLAIKGEQTAVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=254822 CSW12_RS08875 WP_065229238.1 1674980..1676218(+) (cinA) [Bacillus cereus strain MLY1]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTGGCTTCAATTGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATCCTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCGACTAGTTTAGATGAAAAGCTTGTGTATGATGAAAAGGCATTAGACTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCACGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAATGCTGGTG
TTTCTTCTGTATTTAAGGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAGGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTAGCGA
TTAAAGGTGAACAAACTGCAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGATCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.293

99.515

0.58
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

40.584

91.505

0.371

Multiple sequence alignment