Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CTT31_RS03990 Genome accession   NZ_CP024625
Coordinates   948145..949380 (-) Length   411 a.a.
NCBI ID   WP_260492011.1    Uniprot ID   -
Organism   Pseudoalteromonas maricaloris strain SCSIO 43202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 943145..954380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTT31_RS03970 (CTT31_03970) rlmM 943303..944388 (+) 1086 WP_010607344.1 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM -
  CTT31_RS03975 (CTT31_03975) pilB 944732..946408 (-) 1677 WP_130164712.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CTT31_RS03980 (CTT31_03980) coaE 946504..947133 (-) 630 WP_260492009.1 dephospho-CoA kinase -
  CTT31_RS03985 (CTT31_03985) pilD 947143..948021 (-) 879 WP_260492010.1 prepilin peptidase Machinery gene
  CTT31_RS03990 (CTT31_03990) pilC 948145..949380 (-) 1236 WP_260492011.1 type II secretion system F family protein Machinery gene
  CTT31_RS03995 (CTT31_03995) - 949435..949872 (-) 438 WP_260492012.1 pilin -
  CTT31_RS04000 (CTT31_04005) nadC 950805..951647 (-) 843 WP_260492397.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CTT31_RS04005 (CTT31_04010) ampD 952579..953121 (+) 543 WP_211859336.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CTT31_RS04010 (CTT31_04015) ampE 953128..953979 (+) 852 WP_010370512.1 beta-lactamase regulator AmpE -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44887.77 Da        Isoelectric Point: 9.6364

>NTDB_id=254483 CTT31_RS03990 WP_260492011.1 948145..949380(-) (pilC) [Pseudoalteromonas maricaloris strain SCSIO 43202]
MNKKSIESSNTLDTFIWVGVNNRGKRLEGEITGSSVALVKAQLRKQGITPSKVKRKPKPLFGLSGAQKITPQDIATVTRQ
IATMLTAGVSLVQTLEMLARGSKNKSLSKLIGHVGDEVKAGQPLAKALRAYPRYFDELYCDLVHSGEQSGALDTIFDRIA
LYKEKTEALKSKIKKALFYPIAVIVVALIVTSILLIFVVPQFQDIFNGFGAELPAFTLMVIGFSEFLQEYWWVFLIGLVL
FGYTYKEMLIRSPAVKHFNDRMILKLPVVGEILKKAAVARYARTLSTTFAAGVPLGDALDSAAGASGNIIYKNAIKEIKA
EVNSGNQMHWAMHNTKVFPDMVVQMVSIGEESGSLDGMLAKVANIYEQEVDDAVDGLSSLLEPLIMVVLGVLIGGLIIAM
YLPIFQLGSVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=254483 CTT31_RS03990 WP_260492011.1 948145..949380(-) (pilC) [Pseudoalteromonas maricaloris strain SCSIO 43202]
ATGAATAAGAAATCTATAGAATCTAGCAATACTTTAGACACCTTTATTTGGGTCGGAGTAAATAATAGAGGTAAACGCCT
CGAAGGCGAGATAACAGGTTCTAGTGTCGCTTTAGTCAAAGCGCAGCTAAGAAAACAGGGTATTACTCCTTCTAAAGTCA
AGCGTAAACCTAAACCACTGTTTGGTTTGTCTGGTGCGCAAAAAATCACTCCTCAAGATATTGCAACGGTCACAAGACAA
ATTGCCACTATGCTGACTGCTGGTGTGTCTCTAGTACAGACCCTTGAGATGCTGGCCAGAGGCAGCAAAAATAAATCATT
GTCTAAACTCATAGGTCATGTGGGCGATGAAGTGAAGGCAGGTCAGCCTTTAGCGAAAGCATTACGTGCTTACCCCAGAT
ATTTTGATGAACTTTATTGCGACCTTGTTCATTCAGGTGAACAGTCTGGTGCACTTGATACCATATTTGACCGTATAGCG
CTCTATAAAGAAAAAACAGAAGCGCTTAAATCTAAAATTAAGAAAGCATTGTTTTACCCCATAGCTGTCATTGTTGTCGC
ATTAATTGTTACCTCTATATTATTAATTTTTGTCGTACCTCAATTCCAAGACATATTCAACGGTTTTGGGGCTGAGTTAC
CTGCATTTACGCTTATGGTTATTGGTTTTTCTGAATTTCTGCAAGAATATTGGTGGGTATTTTTGATTGGACTTGTCCTA
TTTGGCTACACCTATAAAGAAATGCTGATTCGCAGTCCTGCTGTAAAACACTTTAACGACAGAATGATACTTAAACTTCC
AGTTGTCGGTGAAATTCTGAAAAAAGCGGCGGTGGCGCGTTATGCTCGTACGCTTTCGACCACCTTTGCAGCAGGTGTTC
CCCTTGGGGATGCACTCGATTCTGCTGCAGGTGCATCAGGCAATATTATCTACAAAAATGCAATTAAAGAGATTAAAGCA
GAGGTCAACTCGGGTAACCAAATGCACTGGGCAATGCATAACACCAAAGTCTTCCCAGATATGGTAGTTCAAATGGTGTC
TATTGGTGAAGAATCGGGCTCTTTAGACGGTATGCTGGCAAAAGTCGCTAACATTTATGAGCAAGAAGTCGATGATGCGG
TGGATGGCCTATCTAGCTTATTAGAACCATTAATTATGGTGGTGCTCGGCGTACTGATCGGTGGCCTTATTATTGCCATG
TACTTGCCTATATTCCAATTAGGCTCAGTGGTGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-200)

Type II secretion system (T2SS), protein F (T2SSF)

(282-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.367

100

0.594
  pilC Legionella pneumophila strain ERS1305867

54.3

99.027

0.538
  pilC Acinetobacter baylyi ADP1

51.351

99.027

0.509
  pilC Acinetobacter baumannii D1279779

51.351

99.027

0.509
  pilC Vibrio campbellii strain DS40M4

44.03

97.81

0.431
  pilC Vibrio cholerae strain A1552

43.532

97.81

0.426
  pilG Neisseria gonorrhoeae MS11

43.467

96.837

0.421
  pilG Neisseria meningitidis 44/76-A

43.467

96.837

0.421

Multiple sequence alignment