Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   CO687_RS05755 Genome accession   NZ_CP023511
Coordinates   1167818..1168483 (+) Length   221 a.a.
NCBI ID   WP_082307453.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1162818..1173483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS05735 (CO687_05735) - 1163065..1163811 (-) 747 WP_096755041.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CO687_RS05740 (CO687_05740) - 1163916..1166285 (-) 2370 WP_096755042.1 cation-translocating P-type ATPase -
  CO687_RS05745 (CO687_05745) - 1166415..1167155 (+) 741 WP_041789898.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  CO687_RS05750 (CO687_05750) - 1167194..1167721 (+) 528 WP_082307452.1 HXXEE domain-containing protein -
  CO687_RS05755 (CO687_05755) comEA/celA/cilE 1167818..1168483 (+) 666 WP_082307453.1 helix-hairpin-helix domain-containing protein Machinery gene
  CO687_RS05760 (CO687_05760) comEC/celB 1168467..1170707 (+) 2241 WP_082307454.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CO687_RS05765 (CO687_05765) holA 1170798..1171835 (+) 1038 WP_096755043.1 DNA polymerase III subunit delta -
  CO687_RS05770 (CO687_05770) - 1171908..1172513 (+) 606 WP_045773124.1 superoxide dismutase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23500.19 Da        Isoelectric Point: 4.7123

>NTDB_id=247981 CO687_RS05755 WP_082307453.1 1167818..1168483(+) (comEA/celA/cilE) [Streptococcus gordonii strain FDAARGOS_371]
MIEDLIEKAKQYKIALGLGLLGAIAAGFILLQGRDQGGTDVQQLTEQTSSSSSYMNEKSNKSNEISQTETEDQLVTVDVK
GAVKKPGVYQLQSNSRVHDALEKAGGLTDEADLKSVNQAQKLSDEAVVYVAKVGENAVDVTASAPASATSGTNQTKSALV
NLNTATEADFQTISGIGQKRAQDIIAYREANGRFKSVDDLKNVSGIGAKTLEKLKEYVTVD

Nucleotide


Download         Length: 666 bp        

>NTDB_id=247981 CO687_RS05755 WP_082307453.1 1167818..1168483(+) (comEA/celA/cilE) [Streptococcus gordonii strain FDAARGOS_371]
ATGATAGAAGATTTGATAGAAAAAGCAAAGCAATATAAAATTGCTCTAGGTCTTGGTCTATTAGGAGCGATTGCAGCAGG
CTTTATTTTACTACAGGGAAGAGATCAAGGGGGGACAGATGTTCAGCAATTGACAGAGCAAACTTCTTCCTCTAGTTCAT
ATATGAATGAAAAAAGTAACAAGAGTAATGAGATCAGTCAAACCGAGACAGAAGATCAGTTGGTTACAGTTGATGTCAAG
GGTGCGGTAAAAAAGCCTGGTGTCTATCAGTTGCAGTCTAATAGTCGGGTTCATGATGCTTTAGAAAAGGCAGGTGGTTT
AACTGACGAAGCTGACTTAAAATCCGTCAATCAGGCTCAGAAACTGAGCGACGAGGCGGTAGTATATGTAGCCAAGGTCG
GAGAAAATGCTGTAGATGTTACGGCGAGTGCCCCTGCAAGTGCAACATCAGGAACAAATCAGACAAAATCCGCCCTGGTC
AATCTTAATACAGCAACAGAAGCAGACTTTCAAACTATTTCTGGTATCGGGCAAAAACGAGCACAGGATATTATTGCTTA
TCGAGAAGCCAATGGCAGATTTAAGTCTGTAGATGATCTGAAAAATGTATCAGGTATTGGGGCCAAAACTCTAGAAAAAT
TAAAAGAATATGTCACAGTGGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(77-130)

Helix-hairpin-helix motif (HHH_3)

(158-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50.679

100

0.507
  comEA/celA/cilE Streptococcus mitis NCTC 12261

50

99.548

0.498
  comEA/celA/cilE Streptococcus mitis SK321

49.321

100

0.493
  comEA/celA/cilE Streptococcus pneumoniae R6

48.636

99.548

0.484
  comEA/celA/cilE Streptococcus pneumoniae Rx1

48.636

99.548

0.484
  comEA/celA/cilE Streptococcus pneumoniae D39

48.636

99.548

0.484
  comEA Latilactobacillus sakei subsp. sakei 23K

35.51

100

0.394
  comEA Streptococcus thermophilus LMD-9

57.432

66.968

0.385
  comEA Bacillus subtilis subsp. subtilis str. 168

38.679

95.928

0.371

Multiple sequence alignment