Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FORC72_RS17330 Genome accession   NZ_CP023472
Coordinates   3352946..3354058 (-) Length   370 a.a.
NCBI ID   WP_029829203.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_072     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3347946..3359058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC72_RS17300 (FORC72_3023) hemF 3348407..3349324 (-) 918 WP_025499986.1 oxygen-dependent coproporphyrinogen oxidase -
  FORC72_RS17305 (FORC72_3024) - 3349372..3349929 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  FORC72_RS17310 (FORC72_3025) purE 3350129..3350614 (+) 486 WP_120459172.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FORC72_RS17315 (FORC72_3026) - 3350619..3351752 (+) 1134 WP_120459173.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FORC72_RS17320 (FORC72_3027) - 3351816..3352385 (-) 570 WP_005386647.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  FORC72_RS17325 (FORC72_3028) - 3352464..3352943 (-) 480 WP_005461440.1 DUF494 family protein -
  FORC72_RS17330 (FORC72_3029) dprA 3352946..3354058 (-) 1113 WP_029829203.1 DNA-processing protein DprA Machinery gene
  FORC72_RS17335 (FORC72_3030) - 3354042..3355136 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  FORC72_RS17340 (FORC72_3031) def 3355275..3355793 (+) 519 WP_005461416.1 peptide deformylase -
  FORC72_RS17345 (FORC72_3032) fmt 3355827..3356774 (+) 948 WP_120459174.1 methionyl-tRNA formyltransferase -
  FORC72_RS17350 (FORC72_3033) rsmB 3356855..3358138 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39873.46 Da        Isoelectric Point: 6.4133

>NTDB_id=247357 FORC72_RS17330 WP_029829203.1 3352946..3354058(-) (dprA) [Vibrio parahaemolyticus strain FORC_072]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPSLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=247357 FORC72_RS17330 WP_029829203.1 3352946..3354058(-) (dprA) [Vibrio parahaemolyticus strain FORC_072]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCATCCTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCTCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTGTTTGTCGA
AGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCTAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGTTTAGCGCTTGGGATTGATGGCCATGCT
CATGACGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAATCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTTGTGGAAGCGGCCGAGAAAAGTGGATCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.865

100

0.849
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376

Multiple sequence alignment