Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SYC_RS00060 Genome accession   NC_006576
Coordinates   12230..12823 (-) Length   197 a.a.
NCBI ID   WP_011242325.1    Uniprot ID   Q5N665
Organism   Synechococcus elongatus PCC 6301     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7230..17823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYC_RS00040 (syc0008_d) - 7716..8972 (+) 1257 WP_011242321.1 Y-family DNA polymerase -
  SYC_RS00045 (syc0009_d) - 8950..9786 (+) 837 WP_231621293.1 hypothetical protein -
  SYC_RS00050 (syc0010_c) ilvC 10343..11335 (-) 993 WP_011242323.1 ketol-acid reductoisomerase -
  SYC_RS00055 (syc0011_d) - 11415..12227 (+) 813 WP_234701783.1 PHP domain-containing protein -
  SYC_RS00060 (syc0012_c) clpP 12230..12823 (-) 594 WP_011242325.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  SYC_RS00065 (syc0013_d) psb29 12954..13718 (+) 765 WP_039755956.1 photosystem II biogenesis protein Psp29 -
  SYC_RS00070 (syc0014_d) - 13840..14418 (+) 579 WP_011378080.1 hypothetical protein -
  SYC_RS00075 (syc0015_c) rpoS 14434..15366 (-) 933 WP_011378081.1 RpoD/SigA family RNA polymerase sigma factor Regulator
  SYC_RS00080 - 15571..15756 (+) 186 WP_039755693.1 hypothetical protein -
  SYC_RS00085 (syc0016_d) - 16174..17241 (+) 1068 WP_011378082.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21695.75 Da        Isoelectric Point: 4.6949

>NTDB_id=24469 SYC_RS00060 WP_011242325.1 12230..12823(-) (clpP) [Synechococcus elongatus PCC 6301]
MIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMN
HIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPL
SRIEDDTDRDFFMSASEAVEYGLIDRVIDRRALKATA

Nucleotide


Download         Length: 594 bp        

>NTDB_id=24469 SYC_RS00060 WP_011242325.1 12230..12823(-) (clpP) [Synechococcus elongatus PCC 6301]
ATGATCCCCATCGTCGTCGAAGAATCTGGACGGGGCGAACGCGCCTTTGATATCTACTCACGTCTGTTGCGGGAGCGGAT
TATCTTCTTGGGCGAGCCTGTCACCTCTGATGTCGCCAACCGTATCGTGGCGCAGTTGCTGTTCCTCGAAGCGGAAGATC
CCGAGAAAGATATCTACCTCTACATCAATTCGCCGGGCGGCTCGGTCTATGACGGACTGGGTATCTTCGACACAATGAAC
CACATCCGACCGGATGTCTCGACCGTTTGTGTCGGGCTGGCTGCCAGCATGGGCGCCTTCCTGCTCGCAGCCGGAGCCAA
AGGTAAGCGCACCAGCTTGGCCCACTCGCGGATCATGATTCACCAACCCTTGGGTGGTGCTCAAGGTCAGGCTAAGGACA
TCGAAATCCAAGCCAACGAAATCCTCTACATCAAGCAGAACTTGAACGAGGTTTTGGCGGAGCGCACCGGCCAGCCCCTC
AGCCGCATTGAAGATGACACCGATCGCGACTTCTTCATGTCCGCGAGTGAGGCGGTTGAATACGGCCTGATCGATCGCGT
CATCGATCGCCGCGCCCTCAAAGCCACGGCTTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5N665

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.021

95.431

0.64
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.263

96.447

0.629
  clpP Lactococcus lactis subsp. cremoris KW2

51.02

99.492

0.508
  clpP Streptococcus thermophilus LMG 18311

50.51

99.492

0.503
  clpP Streptococcus thermophilus LMD-9

50.51

99.492

0.503
  clpP Streptococcus pneumoniae D39

50

99.492

0.497
  clpP Streptococcus pneumoniae Rx1

50

99.492

0.497
  clpP Streptococcus pneumoniae R6

50

99.492

0.497
  clpP Streptococcus pneumoniae TIGR4

50

99.492

0.497
  clpP Streptococcus mutans UA159

49.49

99.492

0.492
  clpP Streptococcus pyogenes JRS4

48.98

99.492

0.487
  clpP Streptococcus pyogenes MGAS315

48.98

99.492

0.487
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

48.98

99.492

0.487

Multiple sequence alignment