Detailed information NTG0024470

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SYC_RS00075
• Genome accession: NC_006576
• Coordinates: 14434..15366 (-)
• Length: 310 a.a.
• NCBI ID: WP_011378081.1
• Uniprot ID: Q31MY2
• Organism: Synechococcus elongatus PCC 6301
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 9434..20366

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SYC_RS00050 (syc0010_c)	ilvC	10343..11335 (-)	993	WP_011242323.1	ketol-acid reductoisomerase	-
SYC_RS00055 (syc0011_d)	-	11415..12227 (+)	813	WP_234701783.1	PHP domain-containing protein	-
SYC_RS00060 (syc0012_c)	clpP	12230..12823 (-)	594	WP_011242325.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
SYC_RS00065 (syc0013_d)	psb29	12954..13718 (+)	765	WP_039755956.1	photosystem II biogenesis protein Psp29	-
SYC_RS00070 (syc0014_d)	-	13840..14418 (+)	579	WP_011378080.1	hypothetical protein	-
SYC_RS00075 (syc0015_c)	rpoS	14434..15366 (-)	933	WP_011378081.1	RpoD/SigA family RNA polymerase sigma factor	Regulator
SYC_RS00080	-	15571..15756 (+)	186	WP_039755693.1	hypothetical protein	-
SYC_RS00085 (syc0016_d)	-	16174..17241 (+)	1068	WP_011378082.1	hypothetical protein	-
SYC_RS00090 (syc0017_d)	-	17254..17928 (+)	675	WP_011242330.1	acyltransferase	-
SYC_RS13965 (syc0018_d)	-	18104..18262 (+)	159	WP_011242331.1	hypothetical protein	-
SYC_RS13690	-	18244..18546 (+)	303	WP_126147952.1	hypothetical protein	-
SYC_RS13695	-	18944..19105 (-)	162	WP_155813833.1	hypothetical protein	-
SYC_RS00100 (syc0019_c)	-	19151..19846 (-)	696	WP_155813835.1	hypothetical protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35282.51 Da
• Isoelectric Point: 9.6197

>NTDB_id=24470 SYC_RS00075 WP_011378081.1 14434..15366(-) (rpoS) [Synechococcus elongatus PCC 6301]
MASASAHAVATAQRRTRDNVSWYLSSIGRIPLLTADQEIELGQKVQVMMNLLEETSSDRTFTEAETAAIQLGQRAKERMI
KANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLTERL
SQIRKVTRELAHELGRLPSRQEIAEAVQLPLNDLETILRQSRQCTSLDAPVSGEDGKSFLGELIADPNGNEPMDIMENAM
QREQLDAWLEHLTPQERQVLYLRFGLGDGERHTLAEIGRMMEVSRERVRQVEVKALRKLRNLTKRSRIAV

Nucleotide

• Length: 933 bp

>NTDB_id=24470 SYC_RS00075 WP_011378081.1 14434..15366(-) (rpoS) [Synechococcus elongatus PCC 6301]
ATGGCGAGTGCTTCGGCTCATGCTGTCGCGACGGCTCAGCGACGAACAAGAGATAACGTCAGTTGGTATCTCAGCTCCAT
CGGTCGGATTCCATTGCTCACCGCCGATCAGGAGATCGAGCTGGGGCAGAAAGTGCAGGTGATGATGAACCTGCTGGAAG
AAACTTCTAGCGATCGCACGTTTACTGAGGCCGAAACCGCAGCGATCCAGCTGGGGCAGCGTGCTAAGGAACGGATGATC
AAGGCCAACTTGCGTCTTGTGGTCTCTGTGGCCAAAAAGTACCAAGGTAAGGGTCTTGAGTTTCTTGACCTGATCCAAGA
AGGCGCTCTCGGGCTAGAACGTGCTGTCGAGAAATTTGACCCCTCCAAGGGCTACAAGTTTTCCACCTATGCCTTTTGGT
GGATTCGCCAGAGCATGACAAGGGCGATCGCCTGCCAATCGCGCACTATTCGCCTGCCGGTTCACTTGACTGAACGGCTG
AGCCAAATCCGCAAAGTGACTCGGGAACTGGCGCACGAGCTAGGCCGTTTGCCCTCTCGCCAAGAAATTGCAGAAGCGGT
TCAGTTGCCACTGAATGACCTCGAAACAATTCTGCGTCAGTCGCGCCAATGCACCAGCCTAGATGCTCCAGTCAGTGGTG
AAGATGGCAAGAGTTTCCTGGGTGAGCTGATTGCTGATCCCAACGGCAATGAGCCCATGGACATCATGGAAAATGCCATG
CAGCGCGAGCAGCTTGATGCTTGGCTCGAGCATCTCACGCCCCAAGAGCGCCAGGTGCTCTATCTCCGCTTTGGACTGGG
TGATGGCGAACGTCATACCCTCGCTGAAATCGGCCGGATGATGGAAGTCTCGCGCGAGCGGGTCCGCCAAGTTGAGGTCA
AAGCGCTGCGTAAGCTCCGCAACCTGACGAAGCGATCGCGGATTGCTGTCTAG

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (248-301)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (18-48)

• Sigma-70 region 3 (Sigma70_r3) (158-234)

• Sigma-70 region 2 (Sigma70_r2) (79-148)

3D structure

• AlphaFold DB: Q31MY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.535	97.097	0.384