Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | PSYC_RS00325 | Genome accession | NC_007204 |
| Coordinates | 69402..70625 (-) | Length | 407 a.a. |
| NCBI ID | WP_011279376.1 | Uniprot ID | Q4FVM1 |
| Organism | Psychrobacter arcticus 273-4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 64402..75625
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSYC_RS00305 (Psyc_0059) | - | 66427..66762 (+) | 336 | WP_011279372.1 | pyrimidine/purine nucleoside phosphorylase | - |
| PSYC_RS00310 (Psyc_0060) | rlmB | 66968..67738 (+) | 771 | WP_011279373.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| PSYC_RS00315 (Psyc_0061) | coaE | 67701..68393 (-) | 693 | WP_011279374.1 | dephospho-CoA kinase | - |
| PSYC_RS00320 (Psyc_0062) | pilD | 68477..69376 (-) | 900 | WP_011279375.1 | prepilin peptidase | Machinery gene |
| PSYC_RS00325 (Psyc_0063) | pilC | 69402..70625 (-) | 1224 | WP_011279376.1 | type II secretion system F family protein | Machinery gene |
| PSYC_RS00330 (Psyc_0064) | pilB | 70862..72571 (-) | 1710 | WP_041757403.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSYC_RS00335 (Psyc_0065) | tpiA | 73127..73936 (+) | 810 | WP_011279378.1 | triose-phosphate isomerase | - |
| PSYC_RS00340 (Psyc_0066) | secG | 74165..74473 (+) | 309 | WP_011279379.1 | preprotein translocase subunit SecG | - |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44603.52 Da Isoelectric Point: 9.6839
>NTDB_id=24426 PSYC_RS00325 WP_011279376.1 69402..70625(-) (pilC) [Psychrobacter arcticus 273-4]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSHSLELAKATLRKQGITVKSIKKKPKPLYSFKKPIKPIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGNFASALRRHPRYFDDLFCSLVDSGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVVVVAIIVTIILLVKVVPVFADLFGSFGAELPAFTQMVVSMSEWMQAWWFMLIVFIGGAIIGF
SEAKKRSKKFRDFLDRVALKAPIFGNIAYQAVIARFARTLSTTFAAGVPLIDALDSTAGAANNVVFYNAIQQIKNDVSTG
QQLQFSIRSTNLFPSLVIQMVGIGEESGSLEDMLDKVAIYYENEVDNAVDGLTSLMEPLIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSHSLELAKATLRKQGITVKSIKKKPKPLYSFKKPIKPIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGNFASALRRHPRYFDDLFCSLVDSGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVVVVAIIVTIILLVKVVPVFADLFGSFGAELPAFTQMVVSMSEWMQAWWFMLIVFIGGAIIGF
SEAKKRSKKFRDFLDRVALKAPIFGNIAYQAVIARFARTLSTTFAAGVPLIDALDSTAGAANNVVFYNAIQQIKNDVSTG
QQLQFSIRSTNLFPSLVIQMVGIGEESGSLEDMLDKVAIYYENEVDNAVDGLTSLMEPLIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
Nucleotide
Download Length: 1224 bp
>NTDB_id=24426 PSYC_RS00325 WP_011279376.1 69402..70625(-) (pilC) [Psychrobacter arcticus 273-4]
ATGGCAAAAGCTAAGACCGACATGCTGTTAGACTTTGTCTATGATGGGGTCAACCGGCGCGGGCAAAAGGTAAAAGGTGA
GACCACCAGTCATAGCTTAGAGCTTGCCAAAGCCACATTGCGCAAACAAGGTATCACGGTTAAAAGTATCAAGAAAAAGC
CAAAACCCTTATATAGCTTTAAAAAACCCATCAAGCCTATCGATATTGCTATTTTTGCGCGTCAATTGGCAACGATGATG
AAAGCTGGGGTGCCATTGACCCAATCCTTTGAAATTGTTGCTGACTCTCTCGATAACCCAAGTATGAAAGATTTGGTTTT
ACAAATCAAAGCCGATATTGAAGCTGGTGGCAACTTTGCTTCAGCATTACGCAGGCATCCACGATATTTTGATGACCTTT
TTTGCTCGCTTGTCGATTCTGGTGAGCAGTCAGGTGCGTTAGAAACCATGTTAGAGCGGGTTGCGACGTATAAAGAAAAA
AGCGAGCTGCTCAAAGCTAAAATCAAAAAAGCCATGAAATATCCTATCGCGGTCGTTGTAGTCGCTATCATTGTGACCAT
CATTCTGCTCGTTAAAGTCGTTCCAGTATTTGCTGATTTATTTGGCTCTTTTGGCGCAGAGCTACCTGCTTTTACGCAGA
TGGTAGTAAGTATGTCTGAGTGGATGCAAGCGTGGTGGTTCATGTTAATTGTGTTTATCGGTGGCGCTATTATCGGATTT
TCAGAAGCTAAGAAGCGCTCAAAGAAATTTCGCGATTTCTTAGACCGTGTGGCATTAAAAGCCCCGATATTTGGTAATAT
CGCTTACCAAGCTGTTATTGCGCGTTTTGCTCGCACTTTGTCTACCACTTTTGCTGCTGGCGTACCACTTATTGATGCTC
TGGACTCTACTGCGGGCGCGGCAAATAACGTGGTGTTTTATAACGCGATTCAGCAAATCAAAAATGACGTCTCTACAGGG
CAACAATTACAGTTCTCCATACGCTCAACCAATTTATTTCCAAGCCTTGTCATTCAAATGGTTGGTATCGGTGAAGAGTC
TGGTAGCTTGGAAGACATGCTCGATAAAGTAGCGATCTACTATGAAAACGAAGTCGATAACGCGGTTGATGGTTTGACCA
GCTTGATGGAGCCGCTTATTATGGCGGTACTTGGCGTATTAGTCGGTGGCTTGGTCATTGCCATGTACCTACCAATTTTT
CAAATGGGCTCAGTGGTAGGCTAA
ATGGCAAAAGCTAAGACCGACATGCTGTTAGACTTTGTCTATGATGGGGTCAACCGGCGCGGGCAAAAGGTAAAAGGTGA
GACCACCAGTCATAGCTTAGAGCTTGCCAAAGCCACATTGCGCAAACAAGGTATCACGGTTAAAAGTATCAAGAAAAAGC
CAAAACCCTTATATAGCTTTAAAAAACCCATCAAGCCTATCGATATTGCTATTTTTGCGCGTCAATTGGCAACGATGATG
AAAGCTGGGGTGCCATTGACCCAATCCTTTGAAATTGTTGCTGACTCTCTCGATAACCCAAGTATGAAAGATTTGGTTTT
ACAAATCAAAGCCGATATTGAAGCTGGTGGCAACTTTGCTTCAGCATTACGCAGGCATCCACGATATTTTGATGACCTTT
TTTGCTCGCTTGTCGATTCTGGTGAGCAGTCAGGTGCGTTAGAAACCATGTTAGAGCGGGTTGCGACGTATAAAGAAAAA
AGCGAGCTGCTCAAAGCTAAAATCAAAAAAGCCATGAAATATCCTATCGCGGTCGTTGTAGTCGCTATCATTGTGACCAT
CATTCTGCTCGTTAAAGTCGTTCCAGTATTTGCTGATTTATTTGGCTCTTTTGGCGCAGAGCTACCTGCTTTTACGCAGA
TGGTAGTAAGTATGTCTGAGTGGATGCAAGCGTGGTGGTTCATGTTAATTGTGTTTATCGGTGGCGCTATTATCGGATTT
TCAGAAGCTAAGAAGCGCTCAAAGAAATTTCGCGATTTCTTAGACCGTGTGGCATTAAAAGCCCCGATATTTGGTAATAT
CGCTTACCAAGCTGTTATTGCGCGTTTTGCTCGCACTTTGTCTACCACTTTTGCTGCTGGCGTACCACTTATTGATGCTC
TGGACTCTACTGCGGGCGCGGCAAATAACGTGGTGTTTTATAACGCGATTCAGCAAATCAAAAATGACGTCTCTACAGGG
CAACAATTACAGTTCTCCATACGCTCAACCAATTTATTTCCAAGCCTTGTCATTCAAATGGTTGGTATCGGTGAAGAGTC
TGGTAGCTTGGAAGACATGCTCGATAAAGTAGCGATCTACTATGAAAACGAAGTCGATAACGCGGTTGATGGTTTGACCA
GCTTGATGGAGCCGCTTATTATGGCGGTACTTGGCGTATTAGTCGGTGGCTTGGTCATTGCCATGTACCTACCAATTTTT
CAAATGGGCTCAGTGGTAGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baumannii D1279779 |
69.608 |
100 |
0.698 |
| pilC | Acinetobacter baylyi ADP1 |
67.647 |
100 |
0.678 |
| pilC | Pseudomonas stutzeri DSM 10701 |
64.051 |
97.052 |
0.622 |
| pilC | Legionella pneumophila strain ERS1305867 |
55.89 |
98.034 |
0.548 |
| pilC | Vibrio cholerae strain A1552 |
44.118 |
100 |
0.442 |
| pilG | Neisseria gonorrhoeae MS11 |
43.939 |
97.297 |
0.428 |
| pilG | Neisseria meningitidis 44/76-A |
43.687 |
97.297 |
0.425 |
| pilC | Vibrio campbellii strain DS40M4 |
42.145 |
98.526 |
0.415 |