Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CKQ84_RS05425 Genome accession   NZ_CP023019
Coordinates   1267763..1269034 (+) Length   423 a.a.
NCBI ID   WP_105250408.1    Uniprot ID   -
Organism   Shewanella sp. WE21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1262763..1274034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKQ84_RS05410 (CKQ84_05385) - 1263572..1263937 (+) 366 WP_105250405.1 type IV pilin protein -
  CKQ84_RS05415 (CKQ84_05390) - 1264125..1265483 (-) 1359 WP_105250406.1 O-antigen ligase -
  CKQ84_RS05420 (CKQ84_05395) pilB 1265913..1267625 (+) 1713 WP_105250407.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CKQ84_RS05425 (CKQ84_05400) pilC 1267763..1269034 (+) 1272 WP_105250408.1 type II secretion system F family protein Machinery gene
  CKQ84_RS05430 (CKQ84_05405) pilD 1269076..1270002 (+) 927 WP_105250409.1 A24 family peptidase Machinery gene
  CKQ84_RS05435 (CKQ84_05410) coaE 1270151..1270768 (+) 618 WP_105250410.1 dephospho-CoA kinase -
  CKQ84_RS05440 (CKQ84_05415) zapD 1270761..1271495 (+) 735 WP_105250411.1 cell division protein ZapD -
  CKQ84_RS05445 (CKQ84_05420) yacG 1271569..1271778 (+) 210 WP_006083355.1 DNA gyrase inhibitor YacG -
  CKQ84_RS05450 (CKQ84_05425) mutT 1271858..1272250 (+) 393 WP_105250412.1 8-oxo-dGTP diphosphatase MutT -
  CKQ84_RS05455 (CKQ84_05430) - 1272481..1273014 (+) 534 WP_105250413.1 thioredoxin family protein -
  CKQ84_RS05460 (CKQ84_05435) - 1273081..1274007 (-) 927 WP_105250414.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46111.20 Da        Isoelectric Point: 10.0546

>NTDB_id=244089 CKQ84_RS05425 WP_105250408.1 1267763..1269034(+) (pilC) [Shewanella sp. WE21]
MATATTTRKSRTKKAEQKSQPKIYTFEWKGVNRDGKKTAGELRGATAAEIRSQLKSQGVNPKSVRKQSSPLFKLGEANIT
PMDIAMMTRQVATMLAAGVPLVTTFELLGRGHEKAKMRELLGTILTEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVAILVTVLLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIVGGVFLFVRAHRNSQILRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILNIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGNIVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=244089 CKQ84_RS05425 WP_105250408.1 1267763..1269034(+) (pilC) [Shewanella sp. WE21]
ATGGCTACGGCAACGACAACAAGAAAGTCTCGAACTAAGAAAGCCGAGCAAAAAAGCCAGCCCAAAATCTATACCTTCGA
ATGGAAAGGCGTTAACCGCGATGGAAAAAAAACGGCAGGAGAGCTTAGAGGTGCTACCGCAGCCGAAATCCGTAGCCAGC
TTAAATCACAAGGAGTAAACCCTAAGAGCGTTCGTAAGCAGTCATCTCCACTATTTAAGTTAGGTGAAGCCAATATAACC
CCTATGGATATAGCCATGATGACCCGTCAAGTCGCGACTATGTTGGCGGCAGGCGTTCCTTTGGTAACGACATTTGAACT
ACTCGGCCGTGGCCATGAAAAAGCTAAAATGCGGGAATTACTGGGTACTATTTTAACCGAAATTCAATCGGGTATTCCCT
TATCCGATGCTATGCGCCCCCATAGACGTTACTTCGACGAACTATATGTAGACTTAGTCGCCGCGGGTGAGCATTCAGGT
TCACTCGATTTGGTTTTCGATCGAGTCGCAACCTACAGAGAAAAAACGGAAGCGCTCAAATCAAAAATTAAGAAGGCCAT
GTTTTATCCTGCTGCAGTTGTAATTGTCGCTATTTTAGTTACGGTTTTGTTACTTCTTTTTGTGGTGCCACAGTTTGAAG
ATATTTTTAAAGGCTTTGGTGCAGAGCTACCCGCCTTTACGCAACTGGTACTGCATATTTCCCGCGGCTTACAATCCTCT
TGGTATATCTTTTTAGCTGCCATTGTCGGCGGTGTATTTTTATTTGTACGTGCACATCGAAACTCGCAAATTTTACGGGA
TAGAGTCGATGAAGCCGTGCTTAAAATCCCAGCCATTGGACCGATTTTACACAAAGGCGCCATGGCACGTTTCGCCCGCA
CCTTAGCCACCACCTTTGCCGCAGGTGTGCCGTTAATTGATGGCTTAGAGTCCGCCGCTGGCGCATCGGGTAATGCCGTT
TATCGTAAAGCCATATTGAATATTCGCCAAGAAGTCATGGCGGGAATGCAGATGAATGTCGCTATGCAAACCACTGGGCT
CTTCCCCGATATGTTAGTGCAGATGGTGATGATAGGCGAAGAATCCGGCTCACTAGATAACATGCTCAATAAAGTATCAA
CCATCTACGAAATGCAAGTCGATGATGCCGTCGATGGCTTATCAAGTCTAATAGAACCGATTATGATGGTGGTTATCGGT
ACTGTTGTGGGTGGTTTGATTGTTGCCATGTACTTACCTATCTTCCAGATGGGTAATATTGTTGGCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.051

93.617

0.515
  pilC Legionella pneumophila strain ERS1305867

49.257

95.508

0.47
  pilC Acinetobacter baumannii D1279779

49.497

94.09

0.466
  pilC Acinetobacter baylyi ADP1

48.866

93.853

0.459
  pilC Vibrio cholerae strain A1552

46.867

94.326

0.442
  pilC Vibrio campbellii strain DS40M4

44.01

96.69

0.426
  pilG Neisseria meningitidis 44/76-A

42.04

95.035

0.4
  pilG Neisseria gonorrhoeae MS11

42.04

95.035

0.4

Multiple sequence alignment