Detailed information NTG0244090

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CKQ84_RS05430
• Genome accession: NZ_CP023019
• Coordinates: 1269076..1270002 (+)
• Length: 308 a.a.
• NCBI ID: WP_105250409.1
• Uniprot ID: -
• Organism: Shewanella sp. WE21
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1264076..1275002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKQ84_RS05415 (CKQ84_05390)	-	1264125..1265483 (-)	1359	WP_105250406.1	O-antigen ligase	-
CKQ84_RS05420 (CKQ84_05395)	pilB	1265913..1267625 (+)	1713	WP_105250407.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CKQ84_RS05425 (CKQ84_05400)	pilC	1267763..1269034 (+)	1272	WP_105250408.1	type II secretion system F family protein	Machinery gene
CKQ84_RS05430 (CKQ84_05405)	pilD	1269076..1270002 (+)	927	WP_105250409.1	A24 family peptidase	Machinery gene
CKQ84_RS05435 (CKQ84_05410)	coaE	1270151..1270768 (+)	618	WP_105250410.1	dephospho-CoA kinase	-
CKQ84_RS05440 (CKQ84_05415)	zapD	1270761..1271495 (+)	735	WP_105250411.1	cell division protein ZapD	-
CKQ84_RS05445 (CKQ84_05420)	yacG	1271569..1271778 (+)	210	WP_006083355.1	DNA gyrase inhibitor YacG	-
CKQ84_RS05450 (CKQ84_05425)	mutT	1271858..1272250 (+)	393	WP_105250412.1	8-oxo-dGTP diphosphatase MutT	-
CKQ84_RS05455 (CKQ84_05430)	-	1272481..1273014 (+)	534	WP_105250413.1	thioredoxin family protein	-
CKQ84_RS05460 (CKQ84_05435)	-	1273081..1274007 (-)	927	WP_105250414.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34333.78 Da
• Isoelectric Point: 7.7270

>NTDB_id=244090 CKQ84_RS05430 WP_105250409.1 1269076..1270002(+) (pilD) [Shewanella sp. WE21]
MTEFISLLSHSLNQSPWLFITLSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHAEIVTKIGIDKLNTPIDSF
PEKYNLVVPGSACPKCKTAIKPWHNLPVFGWLMLKGKCAACHAPISARYPIIEFITGLLVATLAWHFGPSWQFVFASILT
FVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAVIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGAVVGITMIVSKRLKQGNPIPFGPYIAAAGWIALIWGQSIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=244090 CKQ84_RS05430 WP_105250409.1 1269076..1270002(+) (pilD) [Shewanella sp. WE21]
ATGACTGAATTTATTTCTCTTTTGAGCCACTCTCTAAACCAGAGTCCTTGGCTCTTTATTACGCTAAGCTTTATTTTTGC
CGCCACCATAGGCAGTTTTTTAAACGTAGTGATCCACAGATTTCCTGTGATGATGAAACGGGAATGGCAGCAAGAATGTA
ATCAGTATTTGCAGGAATACCACGCTGAGATAGTCACAAAAATCGGTATTGATAAACTCAATACACCTATAGATAGCTTC
CCCGAAAAATATAATCTCGTGGTGCCGGGCTCAGCCTGCCCTAAGTGCAAAACGGCGATTAAACCTTGGCATAATTTACC
TGTATTCGGCTGGTTAATGCTCAAGGGAAAATGCGCCGCCTGTCACGCCCCCATTTCCGCCCGCTACCCAATAATTGAAT
TCATCACAGGGCTACTTGTTGCGACTTTAGCGTGGCACTTTGGTCCAAGCTGGCAATTTGTCTTTGCGAGCATACTGACA
TTTGTACTTGTCGCCCTTACAGGTATCGATCTTGATGAGATGCTGCTGCCAGATCAAATGACGTTACCGTTACTTTGGCT
CGGCTTGATCATCAATCTAAATCATACCTTTGCGAGCCCAACCGATGCCGTTATCGGTGCGGCAGCTGGCTATTTAAGCT
TGTGGTCCATTTTTTGGCTATTTAAGATCCTCACTGGCAAGGAAGGCATGGGCTATGGGGACTTTAAACTGCTCGCCGTT
TTCGGTGCTTGGCTCGGCTGGCAAATGCTGCCGCTGGTCATTTTACTTTCGTCCTTAGTCGGAGCTGTCGTCGGTATCAC
TATGATTGTCAGTAAACGCCTCAAACAAGGTAATCCCATCCCATTTGGGCCTTATATTGCTGCCGCAGGCTGGATAGCCC
TAATATGGGGTCAATCTATAGTGGATTGGTACTTAAGTACGTTATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (158-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.203	95.779	0.5
pilD	Vibrio campbellii strain DS40M4	50.34	95.455	0.481
pilD	Acinetobacter baumannii D1279779	48.097	93.831	0.451
pilD	Acinetobacter nosocomialis M2	48.097	93.831	0.451
pilD	Neisseria gonorrhoeae MS11	45.017	94.481	0.425