Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   A6J73_RS03670 Genome accession   NZ_CP023011
Coordinates   800738..801985 (+) Length   415 a.a.
NCBI ID   WP_094940737.1    Uniprot ID   -
Organism   Enterococcus hirae strain FDAARGOS_234     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 795738..806985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J73_RS03650 (A6J73_03655) yfmF 796004..797272 (+) 1269 WP_010737266.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  A6J73_RS03655 (A6J73_03660) yfmH 797265..798554 (+) 1290 WP_010720625.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  A6J73_RS03660 (A6J73_03665) - 798785..799675 (+) 891 WP_010720624.1 RodZ domain-containing protein -
  A6J73_RS03665 (A6J73_03670) pgsA 799844..800422 (+) 579 WP_094940736.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  A6J73_RS03670 (A6J73_03675) cinA 800738..801985 (+) 1248 WP_094940737.1 competence/damage-inducible protein A Machinery gene
  A6J73_RS03675 (A6J73_03680) recA 802091..803131 (+) 1041 WP_010720621.1 recombinase RecA Machinery gene
  A6J73_RS03680 (A6J73_03685) rny 803701..805257 (+) 1557 WP_010720620.1 ribonuclease Y -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45730.08 Da        Isoelectric Point: 4.7334

>NTDB_id=244059 A6J73_RS03670 WP_094940737.1 800738..801985(+) (cinA) [Enterococcus hirae strain FDAARGOS_234]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYQTVVGDNPDRLESLLQLAETRSDLIILCGGLGPTEDDLTKEV
TAKHLGEELIQNTEGYKKLLAFFETTKRKMTENNLQQSQIIDGGIALSNRTGLALGTFYQTADHVYLLLPGPPSELKPMF
IEQARPLLEQNFPSEEMLISKVLRFYGIGESQLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDKHAGNQALLALE
EKVLARVGEYFYGYGDDNSLPKVVVELLKERNQTITAAESLTAGAFQSALGEISGVSQVFPGGFITYSLETKAEFLHIDD
ALLKQHGTVSQECAEQMAIQARNLAKTDYAISFTGVAGPDTLEGQPAGTVWIAVATSEGEVISQKYQFTRDRSHIRNSAV
MQGFDLIRRQLLRKK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=244059 A6J73_RS03670 WP_094940737.1 800738..801985(+) (cinA) [Enterococcus hirae strain FDAARGOS_234]
ATGAAATCAGAAATCATAGCAGTAGGGACAGAACTTTTACTAGGACAAGTAGTCAACACGAATGCCACGTTTTTATCCGA
ACAGTTAGCAGACCTCGGGATTGATGTGTATTATCAAACGGTGGTTGGTGATAATCCCGACCGCTTAGAATCATTACTCC
AATTAGCAGAAACCAGAAGTGACTTGATCATTTTATGTGGAGGGTTGGGACCGACAGAAGACGACCTGACGAAAGAAGTT
ACTGCGAAACATCTAGGGGAAGAATTGATCCAAAACACCGAAGGCTATAAAAAATTGTTAGCATTTTTTGAAACGACCAA
GCGTAAAATGACCGAAAACAATTTACAACAATCACAAATCATCGATGGGGGGATTGCTTTATCTAATCGCACAGGCTTAG
CATTAGGTACGTTCTATCAAACAGCGGACCATGTCTATCTCTTGTTACCTGGACCACCGAGCGAATTAAAGCCAATGTTC
ATTGAACAAGCTCGCCCATTATTGGAGCAAAACTTTCCATCTGAAGAAATGCTGATCTCAAAAGTTTTACGTTTTTACGG
TATCGGGGAATCCCAACTAGTCACAGAATTAAAAGACTTGATTGAAACACAGATCAACCCAACGATTGCCCCTTACGCAA
AACCTAACGAAGTCACTTTACGATTAACTGTGAAGACCAAAGACAAACATGCAGGAAACCAAGCTTTACTTGCTTTGGAA
GAAAAAGTATTGGCGAGAGTAGGTGAGTACTTCTATGGATATGGTGATGATAATTCATTGCCTAAAGTGGTCGTAGAATT
ATTAAAGGAAAGAAACCAAACAATTACTGCAGCAGAAAGTTTGACTGCTGGAGCCTTTCAATCAGCTTTGGGAGAGATCT
CTGGTGTTTCTCAAGTCTTCCCAGGAGGCTTCATTACCTATTCTTTAGAAACTAAAGCAGAATTTTTACACATCGATGAT
GCACTATTGAAGCAGCATGGAACCGTCAGCCAAGAATGTGCAGAACAAATGGCTATCCAAGCACGTAATTTAGCAAAAAC
AGATTATGCGATTTCGTTTACTGGAGTGGCTGGACCAGATACCTTAGAAGGACAGCCAGCTGGAACAGTTTGGATCGCGG
TTGCAACCAGCGAAGGGGAGGTCATTTCGCAGAAATACCAATTTACCAGAGACCGTTCTCATATAAGGAATAGCGCAGTA
ATGCAAGGATTTGATCTCATTAGAAGACAACTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

54.067

100

0.545
  cinA Streptococcus pneumoniae TIGR4

52.143

100

0.528
  cinA Streptococcus pneumoniae Rx1

51.905

100

0.525
  cinA Streptococcus mitis SK321

51.905

100

0.525
  cinA Streptococcus pneumoniae R6

51.905

100

0.525
  cinA Streptococcus pneumoniae D39

51.905

100

0.525
  cinA Streptococcus mitis NCTC 12261

51.429

100

0.52
  cinA Bacillus subtilis subsp. subtilis str. 168

47.458

99.518

0.472
  cinA Streptococcus suis isolate S10

42.857

100

0.434

Multiple sequence alignment