Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CJZ72_RS04320 Genome accession   NZ_CP022930
Coordinates   892141..893388 (-) Length   415 a.a.
NCBI ID   WP_081134999.1    Uniprot ID   -
Organism   Enterococcus durans strain BDGP3     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 887141..898388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ72_RS04305 (CJZ72_04300) proC 888234..889037 (+) 804 WP_081135001.1 pyrroline-5-carboxylate reductase -
  CJZ72_RS04310 (CJZ72_04305) rny 889072..890628 (-) 1557 WP_005875117.1 ribonuclease Y -
  CJZ72_RS04315 (CJZ72_04310) recA 890996..892036 (-) 1041 WP_005875116.1 recombinase RecA Machinery gene
  CJZ72_RS04320 (CJZ72_04315) cinA 892141..893388 (-) 1248 WP_081134999.1 competence/damage-inducible protein A Machinery gene
  CJZ72_RS04325 (CJZ72_04320) pgsA 893712..894290 (-) 579 WP_005875113.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJZ72_RS04330 (CJZ72_04325) - 894831..896126 (+) 1296 WP_095443582.1 ISL3 family transposase -
  CJZ72_RS04335 (CJZ72_04330) - 896346..897233 (-) 888 WP_095443649.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45996.50 Da        Isoelectric Point: 4.8191

>NTDB_id=243531 CJZ72_RS04320 WP_081134999.1 892141..893388(-) (cinA) [Enterococcus durans strain BDGP3]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYQTVVGDNPTRLEELIQLAETRSELIILCGGLGPTEDDLTKEV
TAKHLGRELIQNTEGYKKLLTFFETTKRKMTENNLQQSQIIEGGIPLPNRTGLALGTFFQTEDHVYILLPGPPSELKPMF
IEQARPLLEEKFPSEEKLISKVLRFYGIGESRLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDAHAGNQALLALE
ERIQERVGEYFYGYGDDNSLPKVVVDLLKERNQTITAAESLTAGAFQAALGDIPGVSAVFPGGFTTYSLETKANFLTIDR
HFLEKYGTVSQECAEQMALQARKIAGTDYGISFTGVAGPDELEGQPVGTVWIALAYGDEAVISQKYRFTRDRAAIRNSAV
MQGFDLLRRQVLRKK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=243531 CJZ72_RS04320 WP_081134999.1 892141..893388(-) (cinA) [Enterococcus durans strain BDGP3]
ATGAAATCAGAAATTATTGCCGTAGGAACAGAGCTTTTATTAGGGCAAGTTGTCAATACCAATGCGACATTTTTATCAGA
ACAATTAGCAGATCTTGGGATCGACGTCTATTATCAAACAGTTGTGGGAGATAATCCTACACGTTTAGAAGAGTTGATTC
AGTTAGCAGAAACGAGAAGTGAATTGATCATTTTGTGTGGTGGATTAGGACCGACAGAAGATGATCTAACAAAAGAAGTG
ACAGCAAAGCATCTTGGTAGAGAACTAATTCAAAATACAGAAGGATATAAAAAATTATTGACCTTTTTTGAAACAACGAA
ACGAAAGATGACAGAAAACAATTTGCAACAATCACAAATCATCGAAGGGGGAATCCCGCTACCCAATCGTACTGGTCTAG
CCTTGGGTACATTTTTCCAAACAGAAGATCATGTGTATATCTTACTACCGGGTCCGCCAAGTGAATTGAAACCAATGTTC
ATCGAACAAGCGCGTCCGCTATTGGAAGAAAAATTTCCATCAGAAGAAAAATTGATTTCAAAAGTGCTAAGGTTTTATGG
TATTGGAGAGTCACGTCTAGTAACAGAATTAAAAGATTTGATCGAAACACAGATCAATCCAACGATCGCACCTTATGCAA
AACCCAACGAGGTCACTTTGCGATTAACTGTGAAAACAAAGGATGCACATGCAGGAAATCAAGCATTACTAGCTTTAGAA
GAAAGAATCCAAGAACGAGTTGGCGAGTATTTTTATGGCTACGGGGATGACAATTCTCTGCCAAAAGTTGTCGTGGATCT
CTTAAAAGAAAGGAACCAAACGATCACTGCGGCGGAAAGTTTGACCGCAGGAGCTTTTCAAGCTGCATTAGGAGATATCC
CAGGTGTATCTGCAGTCTTTCCTGGTGGTTTTACGACGTATTCGTTAGAAACAAAAGCAAATTTTTTAACGATTGATCGC
CACTTTTTAGAAAAATATGGGACAGTTAGTCAAGAATGTGCGGAGCAAATGGCTCTTCAAGCAAGAAAAATAGCAGGAAC
AGATTACGGGATTTCTTTCACTGGAGTAGCTGGACCAGATGAACTCGAAGGACAGCCTGTTGGGACGGTTTGGATTGCGT
TAGCATATGGAGACGAAGCAGTCATTTCACAGAAATATCGATTCACGAGAGACCGCGCAGCGATAAGAAACAGCGCAGTA
ATGCAAGGATTTGATCTGTTAAGAAGACAAGTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

52.871

100

0.533
  cinA Streptococcus pneumoniae TIGR4

52.619

100

0.533
  cinA Streptococcus pneumoniae Rx1

52.381

100

0.53
  cinA Streptococcus pneumoniae R6

52.381

100

0.53
  cinA Streptococcus mitis SK321

52.381

100

0.53
  cinA Streptococcus pneumoniae D39

52.381

100

0.53
  cinA Streptococcus mitis NCTC 12261

51.905

100

0.525
  cinA Bacillus subtilis subsp. subtilis str. 168

49.517

99.759

0.494
  cinA Streptococcus suis isolate S10

43.705

100

0.443

Multiple sequence alignment