Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VF_RS13320 Genome accession   NC_006840
Coordinates   2860934..2862037 (-) Length   367 a.a.
NCBI ID   WP_193332961.1    Uniprot ID   -
Organism   Aliivibrio fischeri ES114     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2855934..2867037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS13285 (VF2534) - 2856327..2856590 (-) 264 WP_005421512.1 DUF1488 domain-containing protein -
  VF_RS13290 (VF2535) aroE 2856601..2857410 (-) 810 WP_011262878.1 shikimate dehydrogenase -
  VF_RS13295 (VF2536) - 2857483..2858040 (-) 558 WP_011262879.1 Sua5/YciO/YrdC/YwlC family protein -
  VF_RS13300 (VF2537) purE 2858240..2858725 (+) 486 WP_005421516.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VF_RS13305 (VF2538) - 2858728..2859840 (+) 1113 WP_011262880.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VF_RS13310 (VF2539) - 2859878..2860447 (-) 570 WP_011262881.1 type I DNA topoisomerase -
  VF_RS13315 (VF2540) - 2860458..2860931 (-) 474 WP_011262882.1 DUF494 family protein -
  VF_RS13320 (VF2541) dprA 2860934..2862037 (-) 1104 WP_193332961.1 DNA-processing protein DprA Machinery gene
  VF_RS13325 (VF2542) - 2862052..2863122 (-) 1071 WP_011262884.1 LysM peptidoglycan-binding domain-containing protein -
  VF_RS13330 (VF2543) def 2863240..2863752 (+) 513 WP_011262885.1 peptide deformylase -
  VF_RS13335 (VF2544) fmt 2863770..2864717 (+) 948 WP_011262886.1 methionyl-tRNA formyltransferase -
  VF_RS13340 (VF2545) rsmB 2864822..2866102 (+) 1281 WP_005421526.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39631.18 Da        Isoelectric Point: 5.4324

>NTDB_id=24272 VF_RS13320 WP_193332961.1 2860934..2862037(-) (dprA) [Aliivibrio fischeri ES114]
MSEEHLSAWLTLCFCPRVGGKVMSRLLSVDSAENILQYNDDQLQALGLSSSQISYLKQTTNKQVETCLTWQEKSSEHTIL
PLTDPRYPKLLSEISAPPPVLFVKGDALCLSEPQVAIVGSRNASLEGLDCAKEFARSIVQHNYVVTSGLALGVDGYAHHG
AIEAKGKTIAVLGSGLEKIYPAKHRALAQRVSENGALVSEFRPDAPPRADNFPRRNRIISGLSTGVLVVEAAERSGSLIT
ARYANEQGREVFALPGSIQNPTAQGSNGLIKSGATLVSSPDDIFNEIGALTECALSHQPSLFEQEVITEQLPFPEVFATV
GGEATPVDIIAERCQMPVHEIMMQLLELELQGFIAAVPGGYIKKRRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=24272 VF_RS13320 WP_193332961.1 2860934..2862037(-) (dprA) [Aliivibrio fischeri ES114]
ATTTCCGAAGAACATTTGTCGGCTTGGCTAACCTTATGTTTTTGTCCTAGAGTAGGCGGGAAAGTCATGTCCCGTTTACT
CAGTGTCGATTCAGCTGAAAATATTCTGCAATACAATGATGATCAATTACAGGCTTTAGGTCTCTCTTCATCTCAAATAT
CCTATCTAAAGCAGACGACAAATAAGCAGGTTGAAACCTGTTTGACTTGGCAAGAAAAGAGTTCTGAACATACGATATTG
CCATTAACTGATCCTAGATACCCCAAATTGTTGTCAGAGATTAGCGCTCCACCTCCAGTGTTGTTTGTTAAAGGGGATGC
TCTCTGTTTATCTGAGCCACAAGTAGCGATTGTCGGGAGCCGAAATGCCAGTCTGGAAGGATTGGATTGTGCTAAAGAGT
TTGCTCGTTCTATTGTTCAGCATAATTATGTTGTAACCAGCGGTCTTGCTCTTGGTGTCGATGGATATGCACATCATGGT
GCAATAGAAGCAAAAGGGAAAACCATTGCTGTTCTTGGTTCTGGTCTAGAAAAGATATACCCAGCCAAGCATCGCGCCTT
AGCTCAGAGAGTGAGTGAAAATGGCGCTTTAGTTTCTGAGTTTAGGCCTGATGCTCCACCAAGAGCGGATAACTTTCCAC
GACGCAATCGAATCATTAGTGGTTTATCAACAGGGGTTCTTGTTGTTGAAGCGGCAGAGCGTTCTGGGTCTTTAATTACA
GCAAGATATGCAAATGAACAGGGACGAGAGGTATTTGCTTTACCTGGTTCTATTCAAAACCCAACAGCTCAAGGTTCGAA
TGGTTTAATTAAATCTGGAGCAACATTAGTATCTTCTCCTGATGATATTTTTAATGAAATAGGAGCTCTGACTGAGTGTG
CACTATCTCATCAACCATCACTTTTCGAACAAGAAGTTATCACAGAACAATTGCCATTTCCTGAAGTGTTCGCTACCGTA
GGCGGTGAGGCGACGCCTGTCGATATAATCGCAGAGCGGTGTCAGATGCCTGTACATGAAATCATGATGCAATTACTTGA
ATTAGAGTTGCAAGGTTTCATCGCTGCAGTCCCAGGGGGTTACATTAAAAAGCGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(315-360)

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

61.602

98.638

0.608
  dprA Vibrio cholerae strain A1552

54.178

100

0.548
  dprA Glaesserella parasuis strain SC1401

46.524

100

0.474
  dprA Legionella pneumophila strain ERS1305867

43.056

98.093

0.422
  dprA Neisseria meningitidis MC58

38.035

100

0.411
  dprA Neisseria meningitidis strain C311

38.035

100

0.411
  dprA Neisseria gonorrhoeae MS11

37.468

100

0.403
  dprA Haemophilus influenzae Rd KW20

43.62

91.826

0.401
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.401

Multiple sequence alignment