Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABC_RS11475 Genome accession   NC_006582
Coordinates   2327276..2328514 (-) Length   412 a.a.
NCBI ID   WP_035201712.1    Uniprot ID   -
Organism   Shouchella clausii KSM-K16     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2322276..2333514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC_RS11460 (ABC2198) - 2323198..2324190 (-) 993 WP_011247041.1 metallophosphoesterase family protein -
  ABC_RS11465 (ABC2199) recA 2324383..2325435 (-) 1053 WP_011247042.1 recombinase RecA Machinery gene
  ABC_RS11470 (ABC2200) - 2325666..2327279 (-) 1614 WP_011247043.1 DEAD/DEAH box helicase -
  ABC_RS11475 (ABC2201) cinA 2327276..2328514 (-) 1239 WP_035201712.1 competence/damage-inducible protein A Machinery gene
  ABC_RS11480 (ABC2202) pgsA 2328543..2329121 (-) 579 WP_011247045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABC_RS11485 (ABC2203) - 2329277..2330167 (-) 891 WP_011247046.1 helix-turn-helix domain-containing protein -
  ABC_RS11490 (ABC2204) - 2330189..2330956 (-) 768 WP_011247047.1 DUF3388 domain-containing protein -
  ABC_RS11495 (ABC2205) - 2331150..2331398 (-) 249 WP_011247048.1 DUF3243 domain-containing protein -
  ABC_RS11500 (ABC2206) - 2331471..2332184 (-) 714 WP_011247049.1 elongation factor P 5-aminopentanone reductase -
  ABC_RS11505 (ABC2207) - 2332181..2333473 (-) 1293 WP_011247050.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44485.92 Da        Isoelectric Point: 6.1197

>NTDB_id=24175 ABC_RS11475 WP_035201712.1 2327276..2328514(-) (cinA) [Shouchella clausii KSM-K16]
MAVGSELLLGQIANTNGQFISKQLASIGVDVYRHTVVGDNEDRLKIALQEAYERADLVILTGGLGPTKDDLTKETVAAFC
GKRLVYDENALHEIEDYFKRHNRVMTPNNKKQAYVIEGCTVLANRHGMAPGMLCELEDGKKLALLPGPPSEMKPMFVNEL
LPKLLGATEQTEITSRVLHFFGIGESQLETDLLDLIATQTNPTIAPLAGDGEVKLRLTVKHADKNEAARLLDETETLIRK
RVGSYLYGYNETTLVKETFLRLQASGLTIASAESLTAGLFSSELAAFAGASHVLKGSVTAYSNELKQQLLQVSSATLASD
GAISEACALEMARGVKTLYGSDIAISFTGVAGPGVQEGHEAGTVFLALLLPGGKERVYTLSLSGGRNAVRMRAVKFGYFY
LLEELKRSNGSK

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=24175 ABC_RS11475 WP_035201712.1 2327276..2328514(-) (cinA) [Shouchella clausii KSM-K16]
ATGGCCGTTGGCTCAGAGCTGCTTCTTGGCCAGATCGCCAATACAAATGGCCAGTTCATCTCTAAACAGCTAGCAAGCAT
TGGTGTCGACGTGTACCGGCACACAGTTGTGGGAGATAACGAGGACAGGCTAAAAATAGCACTTCAAGAAGCATATGAGC
GTGCCGATCTCGTCATTTTAACGGGCGGACTTGGCCCGACAAAAGATGATTTGACGAAAGAAACGGTCGCGGCGTTTTGT
GGAAAAAGGCTTGTGTACGATGAAAACGCGCTTCATGAAATTGAAGATTATTTTAAACGCCATAACCGCGTCATGACGCC
TAACAATAAAAAGCAAGCCTATGTGATTGAAGGCTGCACCGTACTTGCAAACCGTCATGGCATGGCCCCGGGAATGCTAT
GCGAGCTGGAAGACGGGAAAAAATTGGCGCTTTTGCCTGGGCCACCAAGTGAAATGAAGCCAATGTTCGTCAACGAGCTT
TTGCCTAAACTGTTAGGTGCCACTGAACAGACAGAAATCACTTCCCGTGTGCTTCATTTTTTTGGAATTGGGGAATCACA
ATTAGAAACAGACCTTTTGGACTTGATTGCGACGCAAACGAACCCGACAATCGCTCCATTGGCTGGTGATGGGGAAGTGA
AACTGCGCTTGACTGTCAAGCATGCAGATAAAAATGAAGCTGCCCGTTTGCTTGATGAAACGGAAACATTGATTCGGAAA
CGGGTCGGTTCATATTTATATGGCTATAACGAAACGACACTGGTCAAGGAAACGTTTTTGCGTTTGCAGGCGAGCGGTCT
GACAATTGCCAGCGCTGAAAGCTTGACTGCCGGGCTTTTTTCAAGCGAATTGGCTGCGTTCGCTGGCGCATCCCACGTGC
TAAAAGGGAGCGTGACTGCCTACTCCAATGAACTGAAGCAGCAATTGCTTCAAGTTTCAAGCGCCACCCTTGCTAGCGAT
GGCGCCATTAGCGAAGCATGTGCATTGGAAATGGCACGTGGCGTCAAAACACTTTACGGTTCTGATATTGCCATCTCTTT
TACAGGAGTGGCTGGCCCTGGGGTGCAAGAAGGCCACGAAGCGGGCACCGTTTTTCTGGCGCTTCTTTTGCCAGGAGGGA
AAGAGCGCGTATACACGCTGTCTTTATCCGGGGGACGCAATGCCGTACGAATGCGAGCGGTGAAATTTGGCTATTTTTAT
TTACTGGAAGAATTGAAAAGGAGCAATGGTAGTAAATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(252-404)

Damage-inducible protein CinA KH domain (CinA_KH)

(175-248)

Probable molybdopterin binding domain (MoCF_biosynth)

(2-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.843

99.029

0.573
  cinA Streptococcus mitis NCTC 12261

48.387

97.816

0.473
  cinA Streptococcus mitis SK321

48.139

97.816

0.471
  cinA Streptococcus pneumoniae TIGR4

47.395

97.816

0.464
  cinA Streptococcus mutans UA159

47.739

96.602

0.461
  cinA Streptococcus pneumoniae Rx1

46.898

97.816

0.459
  cinA Streptococcus pneumoniae R6

46.898

97.816

0.459
  cinA Streptococcus pneumoniae D39

46.65

97.816

0.456
  cinA Streptococcus suis isolate S10

42.063

91.748

0.386

Multiple sequence alignment