Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CHR53_RS09825 Genome accession   NZ_CP022572
Coordinates   2022685..2023935 (+) Length   416 a.a.
NCBI ID   WP_127486337.1    Uniprot ID   A0A3T0HWP6
Organism   Neobacillus mesonae strain H20-5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2017685..2028935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHR53_RS09795 (CHR53_09850) - 2017715..2019004 (+) 1290 WP_066396263.1 pitrilysin family protein -
  CHR53_RS09800 (CHR53_09855) - 2019073..2019795 (+) 723 WP_066396266.1 SDR family oxidoreductase -
  CHR53_RS09805 (CHR53_09860) - 2019878..2020123 (+) 246 WP_066396272.1 DUF3243 domain-containing protein -
  CHR53_RS09810 (CHR53_09865) - 2020263..2021054 (+) 792 WP_066401082.1 YmfK family protein -
  CHR53_RS09815 (CHR53_09870) - 2021078..2021992 (+) 915 WP_127486335.1 helix-turn-helix domain-containing protein -
  CHR53_RS09820 (CHR53_09875) pgsA 2022084..2022668 (+) 585 WP_066396286.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CHR53_RS09825 (CHR53_09880) cinA 2022685..2023935 (+) 1251 WP_127486337.1 competence/damage-inducible protein A Machinery gene
  CHR53_RS09830 (CHR53_09885) - 2024192..2024476 (+) 285 Protein_1908 DNA recombination/repair protein RecA -
  CHR53_RS09835 (CHR53_09890) ltrA 2025319..2027196 (+) 1878 WP_127486339.1 group II intron reverse transcriptase/maturase -
  CHR53_RS09840 (CHR53_09895) - 2027262..2027645 (+) 384 Protein_1910 recombinase RecA -
  CHR53_RS09845 (CHR53_09900) - 2027978..2028409 (+) 432 Protein_1911 DNA recombination/repair protein RecA -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45050.91 Da        Isoelectric Point: 5.5234

>NTDB_id=240876 CHR53_RS09825 WP_127486337.1 2022685..2023935(+) (cinA) [Neobacillus mesonae strain H20-5]
MNAEIIAVGSELLLGQIVNTNARFISQQLAEAGIDVYFHTVVGDNPARLKAAIKIAEERANIIIFTGGLGPTKDDLTKET
IAKHLGKQLVMDDTALAGIELYFHRTNRIMTENNRKQALIIEGSHVLPNNHGMAPGMLLKKGSRIYILLPGPPKEMEPMF
SQYGIKALSAEVGLKEQIVSRVLRFFGIGEAALETEIIDLIDAQSNPTIAPLAGDGEVTLRLTAKHTDEAVGASMLDEVE
EKIRQRVGQYIYGYDSSSLLEELTKLLKEKKLTITAAESLTGGMFQQEITSISGASSVFKGGVVCYANEIKQLMLQVKPE
TLEVHGAVSEQCANELAENAARIFGTDIGISFTGVAGPDELEGKSVGTVYIGIAMKGRPTMVEEIILGGTRAANRTRAVK
FGCYFLIKTIRESQNA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=240876 CHR53_RS09825 WP_127486337.1 2022685..2023935(+) (cinA) [Neobacillus mesonae strain H20-5]
ATGAATGCGGAAATTATCGCAGTGGGTTCAGAGCTTTTATTAGGTCAAATTGTCAATACGAATGCCAGGTTTATTTCACA
ACAGTTAGCCGAGGCGGGAATTGATGTATATTTTCATACGGTTGTTGGAGACAATCCTGCTAGGCTCAAGGCCGCTATTA
AGATTGCCGAAGAGCGGGCAAATATTATTATTTTTACCGGTGGACTTGGACCGACGAAGGATGATTTAACAAAGGAAACG
ATCGCGAAGCATCTTGGGAAGCAGCTGGTAATGGATGACACAGCTTTAGCAGGGATTGAACTTTATTTTCACAGGACAAA
TCGGATCATGACAGAAAACAACCGAAAGCAGGCACTCATTATAGAAGGTTCCCATGTCCTTCCTAACAATCATGGAATGG
CGCCTGGAATGTTGTTGAAAAAAGGCAGCCGCATATATATCCTCCTTCCGGGCCCGCCAAAGGAAATGGAACCGATGTTT
TCACAATATGGAATAAAGGCGCTTTCTGCGGAGGTGGGTCTTAAGGAACAAATCGTGTCACGCGTACTCCGTTTTTTTGG
AATTGGCGAAGCGGCATTGGAAACTGAAATTATCGACCTTATTGATGCCCAGAGCAATCCTACGATTGCACCGCTTGCCG
GGGATGGTGAGGTTACCTTAAGGTTGACAGCAAAGCATACGGATGAAGCTGTGGGGGCCTCGATGCTGGATGAAGTGGAA
GAAAAAATTAGGCAGCGGGTTGGACAGTATATATATGGTTATGATAGTTCTTCACTTTTGGAAGAACTAACGAAATTGTT
AAAGGAAAAGAAATTGACGATTACAGCGGCAGAAAGTTTAACCGGAGGCATGTTTCAACAGGAAATCACCTCAATTTCAG
GAGCAAGTTCGGTATTCAAAGGCGGAGTAGTCTGCTATGCGAATGAAATTAAGCAGCTGATGTTACAGGTCAAACCGGAA
ACACTCGAAGTCCATGGAGCTGTCAGCGAACAATGTGCTAATGAATTAGCGGAGAATGCAGCGCGGATTTTCGGCACTGA
CATCGGCATCAGCTTTACCGGCGTTGCCGGTCCCGATGAACTGGAAGGAAAGTCGGTAGGAACAGTTTATATTGGGATTG
CGATGAAGGGCCGCCCGACTATGGTTGAGGAAATTATACTAGGCGGTACAAGAGCCGCGAATCGGACACGTGCTGTTAAA
TTTGGCTGTTATTTTTTAATCAAGACTATACGGGAATCACAGAATGCTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T0HWP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.756

98.558

0.589
  cinA Streptococcus mutans UA159

46.778

100

0.471
  cinA Streptococcus mitis SK321

48.039

98.077

0.471
  cinA Streptococcus pneumoniae TIGR4

47.549

98.077

0.466
  cinA Streptococcus mitis NCTC 12261

47.304

98.077

0.464
  cinA Streptococcus pneumoniae Rx1

47.059

98.077

0.462
  cinA Streptococcus pneumoniae R6

47.059

98.077

0.462
  cinA Streptococcus pneumoniae D39

46.814

98.077

0.459
  cinA Streptococcus suis isolate S10

41.266

94.952

0.392

Multiple sequence alignment