Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BSG32_RS02220 Genome accession   NZ_CP022552
Coordinates   426280..427392 (+) Length   370 a.a.
NCBI ID   WP_031776304.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-R     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 421280..432392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG32_RS02200 (BSG32_02210) rsmB 422200..423483 (-) 1284 WP_021449057.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  BSG32_RS02205 (BSG32_02215) fmt 423564..424511 (-) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  BSG32_RS02210 (BSG32_02220) def 424545..425063 (-) 519 WP_005461416.1 peptide deformylase -
  BSG32_RS02215 (BSG32_02225) - 425202..426296 (+) 1095 WP_021449058.1 LysM peptidoglycan-binding domain-containing protein -
  BSG32_RS02220 (BSG32_02230) dprA 426280..427392 (+) 1113 WP_031776304.1 DNA-processing protein DprA Machinery gene
  BSG32_RS02225 (BSG32_02235) - 427395..427874 (+) 480 WP_005461440.1 DUF494 family protein -
  BSG32_RS02230 (BSG32_02240) - 427953..428522 (+) 570 WP_021449061.1 type I DNA topoisomerase -
  BSG32_RS02235 (BSG32_02245) - 428592..429719 (-) 1128 WP_031776305.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  BSG32_RS02240 (BSG32_02250) purE 429724..430209 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  BSG32_RS02245 (BSG32_02255) - 430409..430966 (+) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  BSG32_RS02250 (BSG32_02260) hemF 431014..431931 (+) 918 WP_021449063.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39918.54 Da        Isoelectric Point: 6.4129

>NTDB_id=240653 BSG32_RS02220 WP_031776304.1 426280..427392(+) (dprA) [Vibrio parahaemolyticus strain MAVP-R]
MKPRNNDSDLAAWLKLSCLPGIGGIKMNKLLAKDTPRNIISSSSDQLYQLGLTNKQLQAWASVDKEVDACFTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=240653 BSG32_RS02220 WP_031776304.1 426280..427392(+) (dprA) [Vibrio parahaemolyticus strain MAVP-R]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGATCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAGTTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGTCGACAAAGAGGTCGATGCTTGTTTTACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCTAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAGAATGGAGCTCTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCCAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.561

88.649

0.422
  dprA Haemophilus influenzae Rd KW20

45.104

91.081

0.411
  dprA Neisseria meningitidis strain C311

37.692

100

0.397
  dprA Neisseria meningitidis MC58

37.692

100

0.397
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373

Multiple sequence alignment