Detailed information NTG0240575

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: CG712_RS05260
• Genome accession: NZ_CP022547
• Coordinates: 1012404..1012832 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain B59671
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1007404..1017832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG712_RS05220 (CG712_05255)	-	1007542..1007985 (-)	444	WP_002946118.1	hypothetical protein	-
CG712_RS10305 (CG712_05260)	-	1008059..1008484 (-)	426	WP_096811681.1	CPBP family intramembrane glutamic endopeptidase	-
CG712_RS05230 (CG712_05265)	-	1008727..1008924 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
CG712_RS05235 (CG712_05270)	-	1009173..1010366 (-)	1194	WP_096811682.1	acetate kinase	-
CG712_RS05240 (CG712_05275)	comYH	1010422..1011378 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
CG712_RS05245 (CG712_05280)	comGG	1011423..1011740 (-)	318	WP_096811683.1	competence type IV pilus minor pilin ComGG	-
CG712_RS05250 (CG712_05285)	comYF	1011718..1012155 (-)	438	WP_022096897.1	competence type IV pilus minor pilin ComGF	Machinery gene
CG712_RS05255 (CG712_05290)	comGE	1012172..1012432 (-)	261	WP_096811684.1	competence type IV pilus minor pilin ComGE	-
CG712_RS05260 (CG712_05295)	comYD	1012404..1012832 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
CG712_RS05265 (CG712_05300)	comYC	1012792..1013118 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
CG712_RS05270 (CG712_05305)	comYB	1013115..1014215 (-)	1101	WP_157769911.1	competence type IV pilus assembly protein ComGB	Machinery gene
CG712_RS05275 (CG712_05310)	comGA/cglA/cilD	1014097..1015038 (-)	942	WP_022096896.1	competence type IV pilus ATPase ComGA	Machinery gene
CG712_RS05280 (CG712_05315)	-	1015119..1015481 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=240575 CG712_RS05260 WP_011226626.1 1012404..1012832(-) (comYD) [Streptococcus thermophilus strain B59671]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=240575 CG712_RS05260 WP_011226626.1 1012404..1012832(-) (comYD) [Streptococcus thermophilus strain B59671]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38