Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   CG712_RS05240 Genome accession   NZ_CP022547
Coordinates   1010422..1011378 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain B59671     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1005422..1016378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS05210 (CG712_05245) proC 1005977..1006747 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  CG712_RS05215 (CG712_05250) - 1006777..1007439 (-) 663 WP_096811680.1 CPBP family intramembrane glutamic endopeptidase -
  CG712_RS05220 (CG712_05255) - 1007542..1007985 (-) 444 WP_002946118.1 hypothetical protein -
  CG712_RS10305 (CG712_05260) - 1008059..1008484 (-) 426 WP_096811681.1 CPBP family intramembrane glutamic endopeptidase -
  CG712_RS05230 (CG712_05265) - 1008727..1008924 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  CG712_RS05235 (CG712_05270) - 1009173..1010366 (-) 1194 WP_096811682.1 acetate kinase -
  CG712_RS05240 (CG712_05275) comYH 1010422..1011378 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  CG712_RS05245 (CG712_05280) comGG 1011423..1011740 (-) 318 WP_096811683.1 competence type IV pilus minor pilin ComGG -
  CG712_RS05250 (CG712_05285) comYF 1011718..1012155 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  CG712_RS05255 (CG712_05290) comGE 1012172..1012432 (-) 261 WP_096811684.1 competence type IV pilus minor pilin ComGE -
  CG712_RS05260 (CG712_05295) comYD 1012404..1012832 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  CG712_RS05265 (CG712_05300) comYC 1012792..1013118 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  CG712_RS05270 (CG712_05305) comYB 1013115..1014215 (-) 1101 WP_157769911.1 competence type IV pilus assembly protein ComGB Machinery gene
  CG712_RS05275 (CG712_05310) comGA/cglA/cilD 1014097..1015038 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  CG712_RS05280 (CG712_05315) - 1015119..1015481 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=240573 CG712_RS05240 WP_011226622.1 1010422..1011378(-) (comYH) [Streptococcus thermophilus strain B59671]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=240573 CG712_RS05240 WP_011226622.1 1010422..1011378(-) (comYH) [Streptococcus thermophilus strain B59671]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment