Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   CG712_RS05270 Genome accession   NZ_CP022547
Coordinates   1013115..1014215 (-) Length   366 a.a.
NCBI ID   WP_157769911.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain B59671     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1008115..1019215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS05230 (CG712_05265) - 1008727..1008924 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  CG712_RS05235 (CG712_05270) - 1009173..1010366 (-) 1194 WP_096811682.1 acetate kinase -
  CG712_RS05240 (CG712_05275) comYH 1010422..1011378 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  CG712_RS05245 (CG712_05280) comGG 1011423..1011740 (-) 318 WP_096811683.1 competence type IV pilus minor pilin ComGG -
  CG712_RS05250 (CG712_05285) comYF 1011718..1012155 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  CG712_RS05255 (CG712_05290) comGE 1012172..1012432 (-) 261 WP_096811684.1 competence type IV pilus minor pilin ComGE -
  CG712_RS05260 (CG712_05295) comYD 1012404..1012832 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  CG712_RS05265 (CG712_05300) comYC 1012792..1013118 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  CG712_RS05270 (CG712_05305) comYB 1013115..1014215 (-) 1101 WP_157769911.1 competence type IV pilus assembly protein ComGB Machinery gene
  CG712_RS05275 (CG712_05310) comGA/cglA/cilD 1014097..1015038 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  CG712_RS05280 (CG712_05315) - 1015119..1015481 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41769.86 Da        Isoelectric Point: 10.1084

>NTDB_id=240577 CG712_RS05270 WP_157769911.1 1013115..1014215(-) (comYB) [Streptococcus thermophilus strain B59671]
MPEKISKTIRRPTGISSWKVWLNKDASLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKEASLSLM
KESLIRGDRLDQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=240577 CG712_RS05270 WP_157769911.1 1013115..1014215(-) (comYB) [Streptococcus thermophilus strain B59671]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGCCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAGCATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGGATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.678

93.443

0.511
  comYB Streptococcus mutans UA159

54.678

93.443

0.511
  comYB Streptococcus gordonii str. Challis substr. CH1

51.17

93.443

0.478
  comGB/cglB Streptococcus mitis NCTC 12261

50.453

90.437

0.456
  comGB/cglB Streptococcus mitis SK321

49.697

90.164

0.448
  comGB/cglB Streptococcus pneumoniae Rx1

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae D39

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae R6

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae TIGR4

49.695

89.617

0.445
  comGB Lactococcus lactis subsp. cremoris KW2

45.758

90.164

0.413

Multiple sequence alignment