Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CGZ53_RS09085 Genome accession   NZ_CP022435
Coordinates   1789435..1790706 (-) Length   423 a.a.
NCBI ID   WP_100912307.1    Uniprot ID   -
Organism   Streptococcus uberis strain NZ01     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1784435..1795706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS09055 (CGZ53_09050) - 1784670..1786232 (-) 1563 WP_100912306.1 DUF2079 domain-containing protein -
  CGZ53_RS09060 (CGZ53_09055) - 1786388..1786687 (-) 300 WP_046389739.1 DUF1292 domain-containing protein -
  CGZ53_RS09065 (CGZ53_09060) ruvX 1786698..1787117 (-) 420 WP_015912066.1 Holliday junction resolvase RuvX -
  CGZ53_RS09070 (CGZ53_09065) - 1787114..1787383 (-) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  CGZ53_RS09075 (CGZ53_09070) spx 1787499..1787897 (-) 399 WP_015912067.1 transcriptional regulator Spx -
  CGZ53_RS09080 (CGZ53_09075) recA 1788214..1789353 (-) 1140 WP_015912068.1 recombinase RecA Machinery gene
  CGZ53_RS09085 (CGZ53_09080) cinA 1789435..1790706 (-) 1272 WP_100912307.1 competence/damage-inducible protein A Machinery gene
  CGZ53_RS09090 (CGZ53_09085) - 1790797..1791351 (-) 555 WP_015912070.1 DNA-3-methyladenine glycosylase I -
  CGZ53_RS09095 (CGZ53_09090) ruvA 1791356..1791949 (-) 594 WP_015912071.1 Holliday junction branch migration protein RuvA -
  CGZ53_RS09100 (CGZ53_09095) - 1791951..1793174 (-) 1224 WP_046388398.1 MDR family MFS transporter -
  CGZ53_RS09105 (CGZ53_09100) mutL 1793184..1795166 (-) 1983 WP_046388867.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45538.17 Da        Isoelectric Point: 6.1834

>NTDB_id=239405 CGZ53_RS09085 WP_100912307.1 1789435..1790706(-) (cinA) [Streptococcus uberis strain NZ01]
MKAEIIAVGTELLTGQVLNTNAQFLSEKMAEIGVDVFFQTAVGDNESRLLNLLDIASQRSDLILLCGGLGPTEDDLTKQT
VASFLGKSLVFEPSASQKLDHFFASRPHYSRTPNNERQAQIIEGSTPIPNITGLAVGGVLEVDGVTYVLLPGPPSELKPM
VNQYLLPALSGNHTALYSRVLRFFGIGESQLVTILSEMIHKQSDPTIAPYAKIGEVTLRLSTKAETPEQAKAKLDGLEQK
ILQTPSFEGGLLADYHYGYGETNSLSAEVVNMLKERSMTITAAESLTAGLFQSTIADFPGSSKLFRGGFVTYHIEEKAKM
LQLQLSDLELHGVVSAFTAKKMAEQSRHLTASDIGVGLTGVAGPDALEGHNVGTVFIGIATLKGAKSYKVSIGGRSRSDI
RYIACLHAFDLVRKTLLNGLNLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=239405 CGZ53_RS09085 WP_100912307.1 1789435..1790706(-) (cinA) [Streptococcus uberis strain NZ01]
ATGAAAGCTGAAATAATAGCAGTTGGAACAGAATTGTTAACAGGACAAGTTTTAAATACGAATGCGCAATTTTTATCTGA
AAAAATGGCTGAGATTGGAGTTGATGTTTTTTTTCAAACAGCTGTGGGTGATAATGAATCTCGCTTACTAAACTTACTTG
ACATTGCAAGCCAGAGAAGTGATTTAATCCTTCTATGTGGAGGTTTAGGTCCAACAGAGGATGATTTAACAAAACAAACT
GTTGCAAGCTTTTTAGGGAAGTCTTTAGTTTTTGAGCCATCCGCCAGTCAAAAATTAGATCACTTTTTTGCGAGTCGACC
TCATTATTCCCGAACTCCAAATAATGAGCGACAAGCGCAAATTATTGAGGGGTCAACACCCATCCCAAATATTACAGGAC
TGGCTGTTGGTGGTGTTTTGGAAGTTGATGGTGTAACCTATGTTCTTTTACCAGGACCACCAAGTGAATTAAAACCGATG
GTCAACCAATACCTTCTACCAGCATTATCAGGTAATCATACTGCCTTATACTCAAGAGTGTTGCGTTTTTTCGGCATTGG
AGAAAGTCAACTTGTGACAATTTTATCAGAAATGATTCATAAGCAATCAGACCCAACAATTGCACCTTATGCAAAGATTG
GTGAAGTGACATTGCGGTTGTCAACAAAAGCAGAAACACCTGAGCAGGCAAAAGCAAAGCTAGATGGTCTTGAACAGAAG
ATTTTACAAACGCCTAGCTTTGAAGGTGGATTATTAGCAGACTATCATTATGGTTATGGCGAAACCAATAGTCTCAGTGC
AGAAGTCGTAAACATGTTAAAGGAAAGAAGCATGACAATAACAGCTGCAGAGAGTCTAACCGCTGGGCTTTTTCAATCAA
CAATTGCCGACTTTCCAGGATCTTCTAAACTATTTCGTGGCGGTTTTGTGACATACCATATTGAGGAAAAGGCTAAAATG
TTACAGTTACAGCTAAGTGATTTAGAGCTCCATGGAGTTGTAAGTGCGTTTACGGCTAAAAAAATGGCGGAGCAGTCACG
TCATTTAACAGCAAGTGATATTGGAGTTGGACTAACAGGTGTGGCAGGACCAGATGCTTTAGAAGGACATAATGTGGGAA
CAGTGTTTATTGGAATTGCAACCTTAAAAGGAGCAAAATCATATAAAGTATCAATAGGTGGAAGAAGTCGTTCAGACATC
CGGTATATTGCTTGTTTACACGCTTTTGATTTGGTCCGAAAAACTTTATTAAATGGTTTGAATTTGCTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(263-416)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-242)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

71.053

98.818

0.702
  cinA Streptococcus mitis NCTC 12261

69.617

98.818

0.688
  cinA Streptococcus pneumoniae TIGR4

69.617

98.818

0.688
  cinA Streptococcus pneumoniae Rx1

69.617

98.818

0.688
  cinA Streptococcus pneumoniae R6

69.617

98.818

0.688
  cinA Streptococcus pneumoniae D39

69.378

98.818

0.686
  cinA Streptococcus mutans UA159

67.849

100

0.678
  cinA Streptococcus suis isolate S10

52.644

98.345

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

46.172

98.818

0.456

Multiple sequence alignment