Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PBPR_RS13395 | Genome accession | NC_006370 |
| Coordinates | 3047769..3048053 (-) | Length | 94 a.a. |
| NCBI ID | WP_011219290.1 | Uniprot ID | - |
| Organism | Photobacterium profundum SS9 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3042769..3053053
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PBPR_RS13365 (PBPRA2627) | yfbR | 3043368..3043952 (+) | 585 | WP_011219285.1 | 5'-deoxynucleotidase | - |
| PBPR_RS13370 (PBPRA2628) | - | 3043952..3045319 (+) | 1368 | WP_041394436.1 | anti-phage deoxyguanosine triphosphatase | - |
| PBPR_RS13375 (PBPRA2629) | - | 3045409..3046062 (-) | 654 | WP_011219287.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| PBPR_RS13380 (PBPRA2630) | rrtA | 3046072..3046635 (+) | 564 | WP_011219288.1 | rhombosortase | - |
| PBPR_RS13385 (PBPRA2631) | - | 3046781..3047119 (+) | 339 | WP_011219289.1 | DUF1971 domain-containing protein | - |
| PBPR_RS13390 | - | 3047469..3047648 (+) | 180 | WP_041394437.1 | hypothetical protein | - |
| PBPR_RS13395 (PBPRA2632) | comEA | 3047769..3048053 (-) | 285 | WP_011219290.1 | ComEA family DNA-binding protein | Machinery gene |
| PBPR_RS13400 (PBPRA2633) | ppiD | 3048244..3050115 (-) | 1872 | WP_011219291.1 | peptidylprolyl isomerase | - |
| PBPR_RS13405 (PBPRA2634) | - | 3050386..3050661 (-) | 276 | WP_041394438.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10411.10 Da Isoelectric Point: 4.4944
>NTDB_id=23880 PBPR_RS13395 WP_011219290.1 3047769..3048053(-) (comEA) [Photobacterium profundum SS9]
MNTIIKMALFSVLLLLAPLSQAANEYEGIEIKININNANAEELDKLLIGIGPEKAESIIIYRKEKGDFQTADDLINVKGI
GLATVDKNRERIEL
MNTIIKMALFSVLLLLAPLSQAANEYEGIEIKININNANAEELDKLLIGIGPEKAESIIIYRKEKGDFQTADDLINVKGI
GLATVDKNRERIEL
Nucleotide
Download Length: 285 bp
>NTDB_id=23880 PBPR_RS13395 WP_011219290.1 3047769..3048053(-) (comEA) [Photobacterium profundum SS9]
ATGAACACGATTATTAAAATGGCATTATTTTCAGTTTTGTTACTCTTAGCGCCGTTAAGTCAGGCTGCTAATGAATACGA
AGGAATTGAAATAAAAATTAACATTAATAATGCAAACGCAGAAGAATTAGATAAGTTGTTGATTGGTATTGGTCCAGAGA
AAGCCGAAAGTATCATTATCTATCGTAAAGAAAAGGGTGATTTTCAGACTGCAGATGATTTGATTAATGTGAAAGGTATT
GGCCTTGCAACTGTTGATAAAAACAGAGAAAGAATAGAATTATAA
ATGAACACGATTATTAAAATGGCATTATTTTCAGTTTTGTTACTCTTAGCGCCGTTAAGTCAGGCTGCTAATGAATACGA
AGGAATTGAAATAAAAATTAACATTAATAATGCAAACGCAGAAGAATTAGATAAGTTGTTGATTGGTATTGGTCCAGAGA
AAGCCGAAAGTATCATTATCTATCGTAAAGAAAAGGGTGATTTTCAGACTGCAGATGATTTGATTAATGTGAAAGGTATT
GGCCTTGCAACTGTTGATAAAAACAGAGAAAGAATAGAATTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
54.737 |
100 |
0.553 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
55.319 |
100 |
0.553 |
| comEA | Vibrio cholerae C6706 |
56 |
79.787 |
0.447 |
| comEA | Vibrio cholerae strain A1552 |
56 |
79.787 |
0.447 |
| comEA | Legionella pneumophila strain ERS1305867 |
38.384 |
100 |
0.404 |
| comEA | Legionella pneumophila str. Paris |
38.384 |
100 |
0.404 |
| comE | Neisseria gonorrhoeae MS11 |
38.71 |
98.936 |
0.383 |
| comE | Neisseria gonorrhoeae MS11 |
38.71 |
98.936 |
0.383 |
| comE | Neisseria gonorrhoeae MS11 |
38.71 |
98.936 |
0.383 |
| comE | Neisseria gonorrhoeae MS11 |
38.71 |
98.936 |
0.383 |