Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PBPR_RS01425 Genome accession   NC_006370
Coordinates   292702..294405 (+) Length   567 a.a.
NCBI ID   WP_011217092.1    Uniprot ID   Q6LVF7
Organism   Photobacterium profundum SS9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 287702..299405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBPR_RS01405 (PBPRA0275) pilM 289879..290913 (+) 1035 WP_011217088.1 type IV pilus biogenesis protein PilM -
  PBPR_RS01410 (PBPRA0276) - 290910..291569 (+) 660 WP_011217089.1 PilN domain-containing protein -
  PBPR_RS01415 (PBPRA0277) - 291562..292161 (+) 600 WP_011217090.1 type 4a pilus biogenesis protein PilO -
  PBPR_RS01420 (PBPRA0278) - 292158..292679 (+) 522 WP_011217091.1 pilus assembly protein PilP -
  PBPR_RS01425 (PBPRA0279) pilQ 292702..294405 (+) 1704 WP_011217092.1 type IV pilus secretin PilQ Machinery gene
  PBPR_RS01430 (PBPRA0280) aroK 294569..295087 (+) 519 WP_011217093.1 shikimate kinase AroK -
  PBPR_RS01435 (PBPRA0281) aroB 295111..296190 (+) 1080 WP_011217094.1 3-dehydroquinate synthase -
  PBPR_RS01440 (PBPRA0282) - 296205..297713 (+) 1509 WP_011217095.1 SPOR domain-containing protein -
  PBPR_RS01445 (PBPRA0283) dam 297828..298664 (+) 837 WP_011217096.1 adenine-specific DNA-methyltransferase -
  PBPR_RS01450 - 298673..298888 (-) 216 WP_041393840.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 62085.73 Da        Isoelectric Point: 5.1973

>NTDB_id=23869 PBPR_RS01425 WP_011217092.1 292702..294405(+) (pilQ) [Photobacterium profundum SS9]
MNRILFIPNVLKHLCLFIVCILLLAVPATATVLIDNQVKKIDFKRDKKGQGVLNVQFAKSQSLVDIRQSGKQLFVDILDT
SISDEMIYTLDVADFATAVNSIETFKIEKGTRLILKMNSAFRYDYTLKGAQFNVMITTKKKTETKKEGIAYKGKPISINF
QDVPVRNVLQLIAEYNDFNLVVSDTVQGNVTLRLDDVPWPQVLDIILQAKGLDKRVNNSVVLVAPKAELAQNEQKALEAK
RKENELASLRSELIQVNYAKAVDLADLLEGTEDGISMLSERGSLHVDDRTNSIIIKDLPSSIESIKDIISALDIPVKQVQ
IEARIVTINEGDVDELGVRWGVSKHNGNFTLGGSIESNLGAVGLLKDDVSVDDFLNVNLAAQKAGASSIAFQVAKIGDIL
LDLELSALQSESKAEIISSPRLVTTNKQTAYIEQGTEIPYLEASSSGAVSVAFKKAVLSLMVTPQITPDNKLVLDLVVTQ
DEPGKTVVTGIGEAVSINTQRIGTQVLVENGETIVLGGIYQHQVNKSVTKVPLLGDLPYLGALFRHSLEEMGKRELLIFI
TPKIVLQ

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=23869 PBPR_RS01425 WP_011217092.1 292702..294405(+) (pilQ) [Photobacterium profundum SS9]
ATGAATCGGATTTTATTCATCCCCAATGTTTTAAAGCATTTATGTTTGTTTATCGTTTGTATATTGCTATTGGCTGTTCC
TGCAACAGCCACGGTGCTTATTGATAATCAAGTGAAAAAGATTGACTTTAAAAGGGATAAAAAAGGGCAGGGTGTGCTAA
ATGTCCAATTTGCAAAATCGCAATCTTTAGTTGATATACGCCAATCAGGTAAACAGCTATTTGTTGACATCTTAGATACA
TCGATCAGTGATGAAATGATTTATACCTTAGATGTTGCCGATTTTGCGACTGCGGTAAATTCAATCGAAACCTTCAAAAT
AGAGAAAGGAACACGGTTAATTCTTAAAATGAACAGTGCTTTTCGTTACGACTACACTCTGAAAGGTGCGCAGTTTAATG
TGATGATTACGACTAAAAAGAAGACTGAGACCAAAAAAGAAGGAATTGCTTATAAAGGTAAACCGATCTCGATTAACTTC
CAAGATGTGCCAGTGCGCAATGTTTTACAGCTAATCGCCGAATATAACGATTTTAATTTAGTCGTCTCTGATACGGTGCA
AGGTAACGTGACATTGCGTCTTGATGATGTGCCATGGCCGCAAGTGTTGGATATTATCCTGCAAGCGAAAGGGCTGGATA
AGCGTGTTAATAATTCAGTGGTCTTGGTGGCTCCTAAAGCTGAGCTGGCTCAAAATGAACAAAAAGCGTTAGAAGCGAAG
CGTAAAGAAAATGAATTAGCGTCATTGCGTTCCGAGCTTATTCAAGTCAACTACGCGAAGGCGGTTGACCTCGCTGATTT
ACTAGAAGGCACTGAAGATGGTATTAGCATGCTATCTGAACGTGGTTCATTACACGTCGATGACCGAACGAATTCAATCA
TCATTAAAGATTTACCAAGCAGTATTGAGAGCATCAAAGACATTATTAGTGCTTTAGATATTCCGGTTAAACAAGTGCAG
ATTGAAGCACGCATCGTGACGATTAATGAAGGTGATGTGGATGAGTTAGGAGTGCGCTGGGGAGTCTCTAAGCACAATGG
TAACTTTACGTTGGGTGGGTCAATTGAAAGCAATTTAGGGGCGGTTGGTTTACTAAAAGATGATGTCAGTGTGGATGACT
TTTTGAATGTAAATTTAGCGGCACAAAAAGCGGGAGCATCATCAATTGCTTTCCAAGTTGCCAAGATTGGTGATATTTTA
CTCGATTTGGAGCTGTCGGCACTGCAATCTGAATCTAAAGCTGAAATTATTTCAAGCCCACGATTAGTGACCACAAACAA
GCAGACGGCGTATATTGAACAAGGGACCGAAATTCCGTATTTGGAGGCATCTTCGAGTGGTGCAGTATCGGTTGCTTTCA
AAAAAGCGGTACTGAGTTTGATGGTGACGCCACAGATTACCCCTGACAATAAATTAGTGCTCGACTTGGTAGTAACTCAA
GATGAACCCGGTAAAACAGTGGTTACGGGCATTGGTGAAGCGGTTTCAATCAACACTCAGCGCATCGGAACCCAAGTTTT
GGTCGAAAATGGTGAAACAATTGTATTGGGTGGGATCTATCAACATCAGGTGAATAAAAGTGTCACGAAAGTACCATTAT
TGGGGGATTTACCGTATTTAGGGGCACTTTTCCGGCATTCTTTGGAAGAAATGGGTAAGCGTGAGCTATTGATTTTTATC
ACTCCTAAGATAGTTTTACAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(178-226)

Bacterial type II/III secretion system short domain (Secretin_N)

(252-318)

Bacterial type II and III secretion system protein (Secretin)

(407-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6LVF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

62.007

98.413

0.61
  pilQ Vibrio cholerae strain A1552

62.007

98.413

0.61
  pilQ Vibrio campbellii strain DS40M4

61.765

95.944

0.593
  pilQ Pseudomonas aeruginosa PAK

43.063

97.884

0.422
  pilQ Legionella pneumophila strain ERS1305867

43.97

95.062

0.418
  pilQ Legionella pneumophila strain Lp02

43.97

95.062

0.418
  comQ Acinetobacter baylyi ADP1

39.492

100

0.411
  pilQ Acinetobacter baumannii strain A118

38.995

100

0.397
  pilQ Acinetobacter baumannii D1279779

38.995

100

0.397

Multiple sequence alignment