Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CEQ48_RS06910 Genome accession   NZ_CP022353
Coordinates   289935..291161 (-) Length   408 a.a.
NCBI ID   WP_089070732.1    Uniprot ID   -
Organism   Vibrio tarriae strain 2521-89     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 284935..296161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS06885 (CEQ48_06885) parC 284937..287222 (+) 2286 WP_089070728.1 DNA topoisomerase IV subunit A -
  CEQ48_RS06890 (CEQ48_06890) yacG 287270..287467 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  CEQ48_RS06895 (CEQ48_06895) zapD 287625..288365 (-) 741 WP_089070729.1 cell division protein ZapD -
  CEQ48_RS06900 (CEQ48_06900) coaE 288397..289005 (-) 609 WP_198301221.1 dephospho-CoA kinase -
  CEQ48_RS06905 (CEQ48_06905) pilD 289002..289877 (-) 876 WP_089070731.1 A24 family peptidase Machinery gene
  CEQ48_RS06910 (CEQ48_06910) pilC 289935..291161 (-) 1227 WP_089070732.1 type II secretion system F family protein Machinery gene
  CEQ48_RS06915 (CEQ48_06915) pilB 291215..292903 (-) 1689 WP_089070733.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CEQ48_RS06920 (CEQ48_06920) pilA 292910..293329 (-) 420 WP_089070734.1 pilin Machinery gene
  CEQ48_RS06925 (CEQ48_06925) nadC 293573..294463 (-) 891 WP_089070735.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CEQ48_RS06930 (CEQ48_06930) ampD 294634..295179 (+) 546 WP_089070736.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CEQ48_RS06935 (CEQ48_06935) fldB 295329..295847 (-) 519 WP_000690112.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45126.52 Da        Isoelectric Point: 10.3424

>NTDB_id=238622 CEQ48_RS06910 WP_089070732.1 289935..291161(-) (pilC) [Vibrio tarriae strain 2521-89]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAITEIEVRDKLKDQHIQIKKLKKGSVSVLARLTHRVKGKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRTASPHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWALIAITAAIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=238622 CEQ48_RS06910 WP_089070732.1 289935..291161(-) (pilC) [Vibrio tarriae strain 2521-89]
ATGAAAGCGACCCAAACCTTACCTTTGAAAAACTATCGCTGGAAAGGCATTAACAGCAACGGCAAAAAAGTCTCCGGCCA
GATGCTCGCCATCACTGAAATCGAAGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTCTCTGTACTGGCGCGCTTAACCCATCGCGTCAAAGGCAAAGACATCACGATTTTGACTCGACAACTGGCAACCATG
CTCACCACGGGCGTACCGATTGTGCAAGCTCTCAAGCTAGTGGGAGATAACCATCGCAAAGCCGAGATGAAATCGATCTT
GGCACAAATCACTAAGGGCGTTGAAGCGGGTACACCACTTTCCAAGGCGATGCGCACGGCCAGCCCCCATTTTGATACCC
TGTATGTCGATCTGGTCGAAACCGGAGAGATGTCCGGTAATTTGCCCGAAGTATTTGAGCGTTTGGCCACCTACCGCGAG
AAAAGTGAACAGCTACGCGCCAAGGTGATTAAAGCGCTCATCTACCCTAGCATGGTGATGTTGGTGGCGCTCGGGGTTTC
CTACTTAATGCTCACCATGGTGATCCCAGAGTTTGAAAGCATGTTCAAAGGTTTTGGTGCTGAATTGCCTTGGTTTACGC
AACAAGTGCTTAAACTCTCACACTGGGTGCAGGCGTACAGTTTATGGGCACTTATCGCCATCACAGCGGCCATTTTTGGC
CTGAAAGCACTGCGTAAAAACTCCTTCCAGATCCGTTTAAAAACCAGCCGCTTAGGGCTGAAATTTCCGATTATTGGCAA
TGTGCTCGCTAAGGCTTCCATTGCCAAATTCAGCCGCACTCTCGCCACCAGCTTTGCCGCGGGGATACCAATTCTCGCCA
GTTTGAAAACCACGGCAAAAACCTCCGGCAATGTGCACTTTGAAACCGCGATTAATGAGGTGTACCGCGATACCGCGGCC
GGTATGCCGATGTACATTGCCATGCGCAATACCGAAGCCTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCAGGTCAACTGGACGATATGCTCAACAAGGTGGCGACCATTTATGAATTTGAAGTCGATAACACGGTCGATAACTTAG
GCAAAATTCTTGAGCCGCTGATCATCGTCTTTCTTGGCGTAGTCGTGGGTGGTTTGGTAGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

97.794

100

0.978
  pilC Vibrio campbellii strain DS40M4

74.25

98.039

0.728
  pilC Acinetobacter baumannii D1279779

42.892

100

0.429
  pilC Acinetobacter baylyi ADP1

42.015

99.755

0.419
  pilC Legionella pneumophila strain ERS1305867

41.791

98.529

0.412
  pilG Neisseria gonorrhoeae MS11

41.791

98.529

0.412
  pilG Neisseria meningitidis 44/76-A

41.294

98.529

0.407
  pilC Pseudomonas stutzeri DSM 10701

41.919

97.059

0.407

Multiple sequence alignment