Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CEQ48_RS06905 Genome accession   NZ_CP022353
Coordinates   289002..289877 (-) Length   291 a.a.
NCBI ID   WP_089070731.1    Uniprot ID   A0AAU8WDV3
Organism   Vibrio tarriae strain 2521-89     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 284002..294877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS06885 (CEQ48_06885) parC 284937..287222 (+) 2286 WP_089070728.1 DNA topoisomerase IV subunit A -
  CEQ48_RS06890 (CEQ48_06890) yacG 287270..287467 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  CEQ48_RS06895 (CEQ48_06895) zapD 287625..288365 (-) 741 WP_089070729.1 cell division protein ZapD -
  CEQ48_RS06900 (CEQ48_06900) coaE 288397..289005 (-) 609 WP_198301221.1 dephospho-CoA kinase -
  CEQ48_RS06905 (CEQ48_06905) pilD 289002..289877 (-) 876 WP_089070731.1 A24 family peptidase Machinery gene
  CEQ48_RS06910 (CEQ48_06910) pilC 289935..291161 (-) 1227 WP_089070732.1 type II secretion system F family protein Machinery gene
  CEQ48_RS06915 (CEQ48_06915) pilB 291215..292903 (-) 1689 WP_089070733.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CEQ48_RS06920 (CEQ48_06920) pilA 292910..293329 (-) 420 WP_089070734.1 pilin Machinery gene
  CEQ48_RS06925 (CEQ48_06925) nadC 293573..294463 (-) 891 WP_089070735.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32539.98 Da        Isoelectric Point: 8.0100

>NTDB_id=238621 CEQ48_RS06905 WP_089070731.1 289002..289877(-) (pilD) [Vibrio tarriae strain 2521-89]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLVLRGKCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFAVALLFFSYMLIAATFIDFDTMLLPDQLTLP
LLWGGIALALLGFSPVSLSDSVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQLLPVIVLLSSVVGV
IFGLIQLRQQKKGIEMAFPFGPYLAIAGWFALLWGNKLIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=238621 CEQ48_RS06905 WP_089070731.1 289002..289877(-) (pilD) [Vibrio tarriae strain 2521-89]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGTAGCTTTCTCAA
TGTGGTGATTTACCGCTTACCGAAAATCATGGAGCGTGAATGGCGCGCCGAGTGTGCTGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACATTGCCAAACGCCAATTCGCGTGATC
GATAATATCCCGCTACTCAGTTGGCTGGTGCTACGCGGCAAATGCTCACACTGTAAAGCGCCAATCAGCGCTCGCTACCC
CTTGATTGAGCTACTCACAGCCCTCATGAGCTTAGTGATTGCCACTCACTTTCCATTCGGTGTGTTTGCCGTGGCGCTGC
TATTTTTCAGCTATATGTTGATTGCAGCGACCTTCATCGACTTCGATACCATGTTGCTGCCCGATCAATTAACGCTACCT
TTACTGTGGGGGGGTATTGCACTAGCACTGCTTGGCTTTTCTCCGGTCTCACTCAGTGACTCCGTGATCGGCGCTATGGC
GGGTTATCTCTCACTGTGGTCGATTTATTGGCTGTTTAAACTACTGACCGGCAAAGAAGGCATGGGCTATGGCGATTTCA
AATTACTCGCGGCACTGGGCGCTTGGCTGGGTTGGCAGCTGTTGCCTGTTATCGTGCTGCTCTCATCGGTGGTTGGAGTG
ATTTTCGGTTTAATCCAACTGCGCCAGCAGAAAAAAGGCATCGAAATGGCCTTTCCGTTTGGCCCTTATCTCGCCATCGC
TGGATGGTTTGCCTTACTGTGGGGCAATAAATTGATTGATTGGTACTTCACCACTTGGGTAGGACAACCGCTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

96.907

100

0.969
  pilD Vibrio campbellii strain DS40M4

76.389

98.969

0.756
  pilD Acinetobacter nosocomialis M2

53.846

93.814

0.505
  pilD Acinetobacter baumannii D1279779

53.48

93.814

0.502
  pilD Neisseria gonorrhoeae MS11

44.097

98.969

0.436

Multiple sequence alignment