Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | CEQ48_RS05850 | Genome accession | NZ_CP022353 |
| Coordinates | 82239..82823 (+) | Length | 194 a.a. |
| NCBI ID | WP_181710719.1 | Uniprot ID | - |
| Organism | Vibrio tarriae strain 2521-89 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 77239..87823
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEQ48_RS05835 (CEQ48_05835) | oxyR | 77644..78537 (+) | 894 | WP_085603459.1 | DNA-binding transcriptional regulator OxyR | - |
| CEQ48_RS05840 (CEQ48_05840) | - | 78613..81090 (-) | 2478 | WP_198301216.1 | penicillin-binding protein 1A | - |
| CEQ48_RS05845 (CEQ48_05845) | pilM | 81233..82249 (+) | 1017 | WP_089070616.1 | type IV pilus assembly protein PilM | Machinery gene |
| CEQ48_RS05850 (CEQ48_05850) | pilN | 82239..82823 (+) | 585 | WP_181710719.1 | PilN domain-containing protein | Machinery gene |
| CEQ48_RS05855 (CEQ48_05855) | pilO | 82816..83406 (+) | 591 | WP_181710720.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CEQ48_RS05860 (CEQ48_05860) | pilP | 83396..83914 (+) | 519 | WP_089070619.1 | pilus assembly protein PilP | Machinery gene |
| CEQ48_RS05865 (CEQ48_05865) | pilQ | 83940..85655 (+) | 1716 | WP_181710721.1 | type IV pilus secretin PilQ | Machinery gene |
| CEQ48_RS05870 (CEQ48_05870) | aroK | 85842..86366 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| CEQ48_RS05875 (CEQ48_05875) | aroB | 86394..87479 (+) | 1086 | WP_198301217.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 22078.54 Da Isoelectric Point: 9.9059
>NTDB_id=238616 CEQ48_RS05850 WP_181710719.1 82239..82823(+) (pilN) [Vibrio tarriae strain 2521-89]
MLHKVNLLPWREARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLSGQIAKQQERIGYLKQHIFALDQQIAKLKIVEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPSLIPEGVYVDKIKMNGHEIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILNPTSNPQDGGAHNG
MLHKVNLLPWREARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLSGQIAKQQERIGYLKQHIFALDQQIAKLKIVEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPSLIPEGVYVDKIKMNGHEIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILNPTSNPQDGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=238616 CEQ48_RS05850 WP_181710719.1 82239..82823(+) (pilN) [Vibrio tarriae strain 2521-89]
ATGTTGCATAAGGTTAACTTACTACCGTGGCGTGAGGCTCGGCGTGAAGCGCATAAACGACGCTTTTTAGGGTTAGTTAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGAGTGGGCAAATCGCTAAGCAGCAAGAGC
GTATCGGTTATTTGAAGCAGCATATTTTTGCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGTTGAAGAAGAACATAAG
GCGTTATTAACTCGCTTAACCGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACCACTGAATTTATGAACCAAATGCC
AAGCCTGATCCCTGAAGGCGTGTATGTCGACAAGATCAAAATGAATGGTCATGAGATAGAAATAACCGGGATCAGCGACT
CCACTGCACGTTTGGCAACCATGCTCGATAACTTGGAGAAATCAGACAAATTAACCGATGTTGAGATGCATGAGATCGTC
TCTGGAAATAAGCGTTTTGGTAAACAATTTCAGAGTTTTAAAGTCTCATTCCAAATTTTAAACCCAACCTCTAACCCACA
AGATGGAGGTGCACACAATGGCTAG
ATGTTGCATAAGGTTAACTTACTACCGTGGCGTGAGGCTCGGCGTGAAGCGCATAAACGACGCTTTTTAGGGTTAGTTAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGAGTGGGCAAATCGCTAAGCAGCAAGAGC
GTATCGGTTATTTGAAGCAGCATATTTTTGCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGTTGAAGAAGAACATAAG
GCGTTATTAACTCGCTTAACCGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACCACTGAATTTATGAACCAAATGCC
AAGCCTGATCCCTGAAGGCGTGTATGTCGACAAGATCAAAATGAATGGTCATGAGATAGAAATAACCGGGATCAGCGACT
CCACTGCACGTTTGGCAACCATGCTCGATAACTTGGAGAAATCAGACAAATTAACCGATGTTGAGATGCATGAGATCGTC
TCTGGAAATAAGCGTTTTGGTAAACAATTTCAGAGTTTTAAAGTCTCATTCCAAATTTTAAACCCAACCTCTAACCCACA
AGATGGAGGTGCACACAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
93.814 |
100 |
0.938 |
| pilN | Vibrio campbellii strain DS40M4 |
57.732 |
100 |
0.577 |