Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CCX84_RS06625 Genome accession   NZ_CP022345
Coordinates   1192375..1193613 (+) Length   412 a.a.
NCBI ID   WP_061138987.1    Uniprot ID   A0A9X7G630
Organism   Bacillus thuringiensis strain c25     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1187375..1198613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX84_RS06595 - 1187430..1188716 (+) 1287 WP_000411984.1 pitrilysin family protein -
  CCX84_RS06600 - 1188817..1189530 (+) 714 WP_000759606.1 SDR family oxidoreductase -
  CCX84_RS06605 - 1189606..1189854 (+) 249 WP_000114450.1 DUF3243 domain-containing protein -
  CCX84_RS06610 - 1189993..1190778 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  CCX84_RS06615 - 1190800..1191711 (+) 912 WP_000137476.1 RodZ domain-containing protein -
  CCX84_RS06620 pgsA 1191776..1192354 (+) 579 WP_001052970.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CCX84_RS06625 cinA 1192375..1193613 (+) 1239 WP_061138987.1 competence/damage-inducible protein CinA Machinery gene
  CCX84_RS06630 recA 1193758..1194366 (+) 609 Protein_1248 recombinase RecA -
  CCX84_RS06635 - 1194694..1195116 (+) 423 Protein_1249 DNA recombination/repair protein RecA -
  CCX84_RS06640 rny 1195597..1197162 (+) 1566 WP_000099770.1 ribonuclease Y -
  CCX84_RS06645 - 1197325..1198119 (+) 795 WP_061138988.1 TIGR00282 family metallophosphoesterase -
  CCX84_RS06650 spoVS 1198269..1198529 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45493.83 Da        Isoelectric Point: 5.3526

>NTDB_id=238529 CCX84_RS06625 WP_061138987.1 1192375..1193613(+) (cinA) [Bacillus thuringiensis strain c25]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKEEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=238529 CCX84_RS06625 WP_061138987.1 1192375..1193613(+) (cinA) [Bacillus thuringiensis strain c25]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCTGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATCGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAATTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTGTTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAGCAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGAAGAACCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.495

100

0.585
  cinA Streptococcus mitis SK321

46.778

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.062

100

0.468
  cinA Streptococcus pneumoniae R6

46.062

100

0.468
  cinA Streptococcus pneumoniae D39

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.98

96.602

0.444
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369

Multiple sequence alignment