Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | CFN79_RS24270 | Genome accession | NZ_CP022344 |
| Coordinates | 1557830..1558294 (+) | Length | 154 a.a. |
| NCBI ID | WP_104946060.1 | Uniprot ID | - |
| Organism | Chromobacterium vaccinii strain XC0014 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1552830..1563294
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFN79_RS07415 (CFN79_07355) | proB | 1553433..1554551 (-) | 1119 | WP_104946058.1 | glutamate 5-kinase | - |
| CFN79_RS07420 (CFN79_07360) | - | 1554627..1556120 (-) | 1494 | WP_104946059.1 | hypothetical protein | - |
| CFN79_RS07425 (CFN79_07365) | - | 1556206..1557552 (-) | 1347 | WP_021478156.1 | adenosylmethionine--8-amino-7-oxononanoate transaminase | - |
| CFN79_RS24270 (CFN79_07370) | pilA2 | 1557830..1558294 (+) | 465 | WP_104946060.1 | pilin | Machinery gene |
| CFN79_RS07435 (CFN79_07375) | - | 1558414..1560270 (+) | 1857 | WP_158677489.1 | PglL family O-oligosaccharyltransferase | - |
| CFN79_RS07440 (CFN79_07380) | - | 1560363..1562147 (+) | 1785 | WP_104946062.1 | PglL family O-oligosaccharyltransferase | - |
| CFN79_RS07445 (CFN79_07385) | rpoH | 1562232..1563095 (-) | 864 | WP_021478152.1 | RNA polymerase sigma factor RpoH | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16108.24 Da Isoelectric Point: 8.9115
>NTDB_id=238513 CFN79_RS24270 WP_104946060.1 1557830..1558294(+) (pilA2) [Chromobacterium vaccinii strain XC0014]
MKKQHRQRGFTLIELMIVVAIVGILAAIAIPAYQDYTKRARVSEGLSLADAAKTAVTEYYATNNSFAASGASPYNTTYGL
ATSITGSAVSSVNVLASGVIQITYNGTVSNGAQVDLVPLVTAGSVQWYCTYTGSGTTAIGTQLSANWVPSTCRQ
MKKQHRQRGFTLIELMIVVAIVGILAAIAIPAYQDYTKRARVSEGLSLADAAKTAVTEYYATNNSFAASGASPYNTTYGL
ATSITGSAVSSVNVLASGVIQITYNGTVSNGAQVDLVPLVTAGSVQWYCTYTGSGTTAIGTQLSANWVPSTCRQ
Nucleotide
Download Length: 465 bp
>NTDB_id=238513 CFN79_RS24270 WP_104946060.1 1557830..1558294(+) (pilA2) [Chromobacterium vaccinii strain XC0014]
ATGAAGAAACAGCATCGGCAGCGGGGCTTTACCCTGATCGAACTGATGATAGTGGTGGCCATCGTCGGCATTTTGGCCGC
GATCGCGATTCCGGCTTATCAGGATTACACCAAGCGCGCGCGGGTGTCGGAAGGCTTGTCTCTGGCGGATGCCGCGAAGA
CGGCTGTGACAGAATATTACGCGACCAACAATTCTTTCGCCGCGTCCGGCGCTTCGCCGTATAACACGACCTACGGTTTG
GCGACTTCCATCACGGGCAGCGCGGTAAGCAGCGTTAACGTTCTGGCTAGCGGTGTGATTCAGATTACTTACAACGGCAC
GGTTTCCAATGGCGCGCAGGTTGACCTCGTGCCTCTTGTGACCGCAGGTTCCGTGCAATGGTATTGCACTTATACTGGCT
CAGGCACAACCGCGATCGGGACTCAATTGAGCGCGAACTGGGTACCGTCCACTTGCCGTCAGTGA
ATGAAGAAACAGCATCGGCAGCGGGGCTTTACCCTGATCGAACTGATGATAGTGGTGGCCATCGTCGGCATTTTGGCCGC
GATCGCGATTCCGGCTTATCAGGATTACACCAAGCGCGCGCGGGTGTCGGAAGGCTTGTCTCTGGCGGATGCCGCGAAGA
CGGCTGTGACAGAATATTACGCGACCAACAATTCTTTCGCCGCGTCCGGCGCTTCGCCGTATAACACGACCTACGGTTTG
GCGACTTCCATCACGGGCAGCGCGGTAAGCAGCGTTAACGTTCTGGCTAGCGGTGTGATTCAGATTACTTACAACGGCAC
GGTTTCCAATGGCGCGCAGGTTGACCTCGTGCCTCTTGTGACCGCAGGTTCCGTGCAATGGTATTGCACTTATACTGGCT
CAGGCACAACCGCGATCGGGACTCAATTGAGCGCGAACTGGGTACCGTCCACTTGCCGTCAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
50 |
96.104 |
0.481 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
49.324 |
96.104 |
0.474 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
43.114 |
100 |
0.468 |
| pilE | Neisseria gonorrhoeae MS11 |
43.478 |
100 |
0.455 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
37.634 |
100 |
0.455 |
| comP | Acinetobacter baylyi ADP1 |
42.593 |
100 |
0.448 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
42.857 |
100 |
0.448 |
| pilA | Haemophilus influenzae Rd KW20 |
41.481 |
87.662 |
0.364 |