Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CFN79_RS00725 Genome accession   NZ_CP022344
Coordinates   139474..140697 (-) Length   407 a.a.
NCBI ID   WP_021479152.1    Uniprot ID   -
Organism   Chromobacterium vaccinii strain XC0014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134474..145697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN79_RS00695 (CFN79_00700) tsaE 135202..135696 (+) 495 WP_021479158.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CFN79_RS00700 (CFN79_00705) - 135654..136895 (+) 1242 WP_104945277.1 N-acetylmuramoyl-L-alanine amidase -
  CFN79_RS00705 (CFN79_00710) yacG 136963..137154 (-) 192 WP_031297030.1 DNA gyrase inhibitor YacG -
  CFN79_RS00710 (CFN79_00715) zapD 137160..137918 (-) 759 WP_031297029.1 cell division protein ZapD -
  CFN79_RS00715 (CFN79_00720) coaE 137955..138569 (-) 615 WP_104945278.1 dephospho-CoA kinase -
  CFN79_RS00720 (CFN79_00725) - 138554..139462 (-) 909 WP_199776195.1 prepilin peptidase -
  CFN79_RS00725 (CFN79_00730) pilC 139474..140697 (-) 1224 WP_021479152.1 type II secretion system F family protein Machinery gene
  CFN79_RS00730 (CFN79_00735) pilF 140735..142441 (-) 1707 WP_104945280.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CFN79_RS00735 (CFN79_00740) - 142609..143718 (-) 1110 WP_104945281.1 porin -
  CFN79_RS00740 (CFN79_00745) - 144116..144436 (-) 321 WP_021479149.1 ComEA family DNA-binding protein -
  CFN79_RS00745 (CFN79_00750) - 144503..145324 (-) 822 WP_021479148.1 cytochrome C assembly family protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44960.76 Da        Isoelectric Point: 10.0197

>NTDB_id=238490 CFN79_RS00725 WP_021479152.1 139474..140697(-) (pilC) [Chromobacterium vaccinii strain XC0014]
MATTAAKKANPGYIWEWEGKDKSGKMIRGELRAESETVAKTQLRRQGINVAKIRRRRSGFGKRITEKDITLFTRQLSTMM
RAGVPLLQAFDIAAKGHSNPAVTRMLLEVRADVETGLSLAESFRKRPLYFDKLFCNIIAAGEAGGVLDTLLDKLATYKEK
VMAIKSKIKSAMIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDQFVHFWWLIFGTLFGAVFAF
FYAFKRTPKMQEQMDRILLRLPVIGDIIRKATIARWARTLSTLFSAGVPLVEALDSVGGAAGNQVYAEATRRIQSDVSTG
SSLSYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLVIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=238490 CFN79_RS00725 WP_021479152.1 139474..140697(-) (pilC) [Chromobacterium vaccinii strain XC0014]
ATGGCGACCACGGCGGCCAAGAAAGCGAATCCAGGCTACATCTGGGAATGGGAAGGCAAGGACAAGTCCGGCAAGATGAT
ACGGGGCGAACTGCGCGCCGAGTCCGAGACTGTCGCCAAGACCCAGTTGCGGCGGCAGGGCATCAATGTCGCCAAGATCC
GTCGCCGTCGCAGCGGTTTCGGCAAGAGAATCACCGAGAAGGACATCACGCTGTTCACCCGCCAGTTGTCGACGATGATG
CGGGCTGGCGTGCCGCTGCTGCAGGCTTTCGACATCGCGGCCAAAGGGCACAGCAATCCGGCGGTGACGCGGATGCTGCT
GGAGGTGAGGGCGGATGTCGAAACCGGCCTGTCGCTGGCGGAGTCGTTCCGCAAGCGTCCGCTGTATTTCGACAAGCTGT
TCTGCAACATCATCGCCGCCGGCGAGGCGGGCGGCGTGCTGGACACCTTGCTGGACAAACTGGCCACCTACAAGGAAAAG
GTGATGGCCATCAAGTCCAAGATCAAATCGGCGATGATCTATCCCTCGGCCATCGTCGGCACCGCCTTCATCATCACCGC
GGTGATCATGATCTACGTGATTCCGGCGTTCAAGGACCTGTTTTCCAGCTTCGGCGCCAACCTGCCGGCGCCGACGCTGT
TCGTGATTTGGCTGTCCGATCAATTCGTCCATTTTTGGTGGCTGATTTTCGGCACCTTGTTCGGCGCGGTTTTCGCTTTT
TTCTATGCGTTCAAGCGCACGCCCAAAATGCAGGAGCAGATGGACCGCATCCTGCTGCGTCTGCCGGTGATCGGCGACAT
CATACGCAAGGCCACCATCGCGCGCTGGGCGCGCACGTTATCGACGCTGTTCTCCGCTGGCGTGCCGCTGGTGGAGGCGC
TGGACTCGGTCGGCGGCGCCGCGGGCAACCAGGTTTACGCCGAAGCGACGCGGCGCATCCAGTCCGACGTCAGCACCGGC
TCCAGCCTCAGCTATTCGATGCAGCGCACCGATCTGTTTCCCAATATGGTGCTGCAGATGACCTCGATCGGCGAGGAGTC
GGGCTCGCTGGACCAGATGCTGGACAAGGTGGCCGACTTTTACGAGGAAGAAGTGGATAATGCGGTGGCCGCGTTGTCCA
GCCTGCTGGAGCCGGCGATCATGGTGATACTGGGTATATTGATAGGCGGGTTGGTGATCGCGATGTACATGCCGATTTTC
AAGATGGGCCAGGTGGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.713

99.263

0.533
  pilC Pseudomonas stutzeri DSM 10701

52.97

99.263

0.526
  pilG Neisseria gonorrhoeae MS11

52.685

96.069

0.506
  pilG Neisseria meningitidis 44/76-A

52.685

96.069

0.506
  pilC Acinetobacter baylyi ADP1

49.14

100

0.491
  pilC Acinetobacter baumannii D1279779

48.403

100

0.484
  pilC Vibrio campbellii strain DS40M4

37.26

100

0.381
  pilC Vibrio cholerae strain A1552

36.935

97.789

0.361

Multiple sequence alignment