Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CFF01_RS16870 Genome accession   NZ_CP022272
Coordinates   3834979..3836244 (+) Length   421 a.a.
NCBI ID   WP_088905558.1    Uniprot ID   A0AAC9U085
Organism   Shewanella marisflavi strain EP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3829979..3841244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFF01_RS16855 (CFF01_16855) - 3830668..3832347 (+) 1680 WP_088905555.1 PglL family O-oligosaccharyltransferase -
  CFF01_RS19225 - 3832773..3832890 (+) 118 Protein_3247 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CFF01_RS16865 (CFF01_16865) pilB 3833184..3834890 (+) 1707 WP_088905557.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CFF01_RS16870 (CFF01_16870) pilC 3834979..3836244 (+) 1266 WP_088905558.1 type II secretion system F family protein Machinery gene
  CFF01_RS16875 (CFF01_16875) pilD 3836292..3837203 (+) 912 WP_088905559.1 A24 family peptidase Machinery gene
  CFF01_RS16880 (CFF01_16880) coaE 3837228..3837833 (+) 606 WP_088905560.1 dephospho-CoA kinase -
  CFF01_RS16885 (CFF01_16885) zapD 3837842..3838576 (+) 735 WP_033540806.1 cell division protein ZapD -
  CFF01_RS16890 (CFF01_16890) yacG 3838625..3838837 (+) 213 WP_088905561.1 DNA gyrase inhibitor YacG -
  CFF01_RS16895 (CFF01_16895) mutT 3838838..3839227 (+) 390 WP_088905562.1 8-oxo-dGTP diphosphatase MutT -
  CFF01_RS16900 (CFF01_16900) - 3839653..3840827 (+) 1175 WP_088903906.1 IS3 family transposase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45964.28 Da        Isoelectric Point: 10.1179

>NTDB_id=237802 CFF01_RS16870 WP_088905558.1 3834979..3836244(+) (pilC) [Shewanella marisflavi strain EP1]
MATASLAKTANRKQKAAKAQPKVITFQWKGTNRDGKKTSGELRGTSSAEIKAQLKSQGVNPKVVKKKAEPLFKSDPKIKA
MDIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPKMRELLGTIVTDVQSGIPLSDSLRPHRQYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEALKSKIKKALFYPAAVVVVAIAVTSLLLLFVVPQFESIFEGFGAELPAFTQLIIGISRWLQASW
YIFLFAIVIGIWLFKRAHLKSQNFRNKVDELILKMPIIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RSALLKVRTEVMSGMQMNVAMRTIGLFPDMLIQMVMIGEESGGLDEMLNKVANIYEMQVDDAVDALSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQLGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=237802 CFF01_RS16870 WP_088905558.1 3834979..3836244(+) (pilC) [Shewanella marisflavi strain EP1]
ATGGCAACCGCATCTCTAGCAAAGACGGCAAACAGAAAGCAAAAAGCAGCCAAAGCACAGCCCAAAGTCATTACCTTTCA
GTGGAAAGGTACTAACCGTGACGGCAAAAAAACCAGTGGAGAATTGCGCGGCACCTCGTCGGCAGAAATTAAGGCGCAGC
TAAAATCCCAAGGGGTTAATCCTAAGGTCGTTAAGAAAAAGGCCGAGCCTCTATTCAAAAGCGATCCTAAGATTAAGGCC
ATGGACATTGCCATGATTACTCGCCAGATAGCAACCATGCTGGCTGCTGGCGTCCCAATCGTAACCACCTTAGAGATGTT
AGGCCGCGGCCATGAAAAACCAAAGATGCGTGAGTTGCTTGGAACCATTGTTACCGATGTACAATCAGGTATTCCACTAT
CAGATTCACTAAGACCACACAGACAATATTTCGATGACCTATACGTTGATTTGGTTGCCGCTGGTGAGCACTCTGGCTCA
CTTGACGCTGTATTCGACAGAATTGCAACCTATCGCGAAAAGGCTGAGGCTCTTAAATCAAAAATTAAAAAAGCATTATT
TTACCCCGCTGCGGTAGTCGTTGTTGCAATTGCTGTAACGAGCTTACTATTGCTTTTTGTTGTACCTCAGTTCGAAAGTA
TTTTTGAAGGATTTGGAGCTGAATTACCAGCATTCACTCAATTAATTATTGGTATATCGAGATGGTTGCAAGCGTCTTGG
TATATTTTCTTATTTGCTATCGTCATAGGTATCTGGCTATTTAAGAGAGCTCATCTAAAATCCCAAAACTTCCGTAATAA
AGTAGATGAACTAATACTCAAAATGCCTATTATTGGAGATATTCTCCATAAAGGTGCAATGGCTCGTTTTGCTCGTACCT
TGGCAACCACCTTCGCAGCAGGTGTCCCTTTGATTGATGGCCTCGAATCCGCTGCAGGGGCATCGGGCAATTATGTGTAC
CGAAGTGCACTGTTGAAAGTGCGAACAGAGGTCATGTCTGGCATGCAGATGAACGTTGCTATGCGTACAATAGGACTATT
CCCCGACATGCTTATTCAGATGGTGATGATTGGTGAGGAATCCGGCGGACTCGATGAGATGCTTAACAAGGTCGCCAACA
TCTATGAGATGCAGGTTGACGATGCGGTGGATGCATTATCTAGCCTCATAGAACCTATTATGATGGTAGTAATTGGTACT
CTTGTTGGCGGCCTCATCGTTGGTATGTATCTGCCTATCTTCCAGCTCGGTAATGTCGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.962

93.824

0.534
  pilC Legionella pneumophila strain ERS1305867

50.248

95.962

0.482
  pilC Acinetobacter baumannii D1279779

49.512

97.387

0.482
  pilC Acinetobacter baylyi ADP1

49.631

96.675

0.48
  pilC Vibrio cholerae strain A1552

47.794

96.912

0.463
  pilC Vibrio campbellii strain DS40M4

44.913

95.724

0.43
  pilG Neisseria meningitidis 44/76-A

41.975

96.2

0.404
  pilG Neisseria gonorrhoeae MS11

41.975

96.2

0.404

Multiple sequence alignment