Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CEJ46_RS02780 Genome accession   NZ_CP022101
Coordinates   560633..561859 (-) Length   408 a.a.
NCBI ID   WP_047688859.1    Uniprot ID   A0A223MVC5
Organism   Vibrio anguillarum strain JLL237     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 555633..566859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ46_RS02740 (CEJ46_02740) rpsP 555972..556220 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  CEJ46_RS02745 (CEJ46_02745) rimM 556250..556804 (+) 555 WP_013857691.1 ribosome maturation factor RimM -
  CEJ46_RS02750 (CEJ46_02750) trmD 556832..557578 (+) 747 WP_010319524.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  CEJ46_RS02755 (CEJ46_02755) rplS 557620..557973 (+) 354 WP_010319525.1 50S ribosomal protein L19 -
  CEJ46_RS02760 (CEJ46_02760) yacG 558054..558251 (-) 198 WP_010319526.1 DNA gyrase inhibitor YacG -
  CEJ46_RS02765 (CEJ46_02765) zapD 558341..559081 (-) 741 WP_013857689.1 cell division protein ZapD -
  CEJ46_RS02770 (CEJ46_02770) coaE 559114..559722 (-) 609 WP_064624393.1 dephospho-CoA kinase -
  CEJ46_RS02775 (CEJ46_02775) pilD 559713..560594 (-) 882 WP_088720881.1 prepilin peptidase Machinery gene
  CEJ46_RS02780 (CEJ46_02780) pilC 560633..561859 (-) 1227 WP_047688859.1 type II secretion system F family protein Machinery gene
  CEJ46_RS02785 (CEJ46_02785) pilB 561902..563590 (-) 1689 WP_088720882.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CEJ46_RS02790 (CEJ46_02790) pilA 563600..564025 (-) 426 WP_010319532.1 pilin Machinery gene
  CEJ46_RS02795 (CEJ46_02795) nadC 564284..565171 (-) 888 WP_017043701.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CEJ46_RS02800 (CEJ46_02800) ampD 565296..565847 (+) 552 WP_232471667.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CEJ46_RS02805 (CEJ46_02805) fldB 565869..566387 (-) 519 WP_088720885.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45283.64 Da        Isoelectric Point: 10.4379

>NTDB_id=236768 CEJ46_RS02780 WP_047688859.1 560633..561859(-) (pilC) [Vibrio anguillarum strain JLL237]
MNTKIKSELKNYRWKGINSSGKKVSGQTLALTELEVRDKLKEQHIQIKKIKKGGVSFITRLTHRVKARDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILSQVTKGVEAGTPISKAMRTASTHFDTLYVDLIHTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPTMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQSYSLWVLIIIILTTIA
VKAVRQKSFLIRLKTSRLGLKFPILGGVIGKASIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=236768 CEJ46_RS02780 WP_047688859.1 560633..561859(-) (pilC) [Vibrio anguillarum strain JLL237]
ATGAACACAAAAATCAAATCAGAACTCAAAAATTATCGTTGGAAAGGCATCAATAGTTCGGGCAAAAAAGTATCTGGCCA
AACTCTCGCTTTAACCGAACTGGAAGTGCGTGACAAACTTAAAGAGCAGCACATTCAAATCAAAAAAATCAAAAAAGGGG
GCGTCTCTTTTATCACCCGCTTGACTCATCGCGTGAAGGCCAGAGACATCACCATTCTGACACGCCAATTAGCGACCATG
CTGACCACGGGCGTGCCCATCGTGCAAGCCTTAAAACTGGTTGGAGATAACCACCGCAAAGCCGAAATGAAATCCATTTT
GTCGCAAGTCACCAAAGGGGTTGAAGCCGGAACGCCAATTTCCAAAGCGATGCGTACCGCCAGCACCCATTTCGATACCT
TGTATGTTGATCTCATTCACACAGGTGAACAGTCAGGTAACTTGGCTGAAGTGTTTGAGCGGCTAGCGACTTATCGAGAA
AAAAGTGAACAACTGCGCGCTAAAGTCATTAAAGCGCTCATCTACCCAACCATGGTGGTGTTGGTCGCGTTAGGTGTTTC
TTACTTAATGCTTACTATGGTGATCCCTGAGTTTGAAAGCATGTTCAAAGGATTCGGAGCCGAATTACCTTGGTTTACAC
AGCAAGTATTGAAACTCTCTCATTGGGTGCAAAGTTACAGTTTGTGGGTACTCATCATCATAATCCTCACCACAATTGCC
GTGAAAGCAGTACGCCAAAAATCTTTTTTAATACGCTTAAAAACCAGCCGATTAGGATTAAAGTTTCCCATTCTTGGCGG
GGTGATAGGCAAAGCCTCTATTGCTAAATTCAGTCGCACACTCGCCACCAGTTTTAGTGCAGGCATTCCGATTTTAGCCA
GCTTAAAAACCACCGCCAAAACCGCTGGCAATGTCCATTTTGAGACGGCGATTAATGAGGTCTATCGTGATACAGCAGCC
GGTATGCCAATGTATATTGCGATGCGTAATACCGAAGCCTTTCCTGAAATGGTGCTGCAAATGGTTATGATTGGTGAAGA
ATCAGGCCGATTGGATGACATGCTCAATAAAGTCGCCACCATTTACGAATTTGAAGTTGATAATACCGTCGATAACTTAG
GCAAAATTCTCGAACCATTGATCATTGTCTTTTTGGGTACGGTGGTCGGCGGTTTGGTGGTGGCAATGTACTTGCCCATC
TTTAACTTAATGAGTGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223MVC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

88.75

98.039

0.87
  pilC Vibrio campbellii strain DS40M4

75.248

99.02

0.745
  pilC Acinetobacter baylyi ADP1

42.211

97.549

0.412
  pilC Acinetobacter baumannii D1279779

40.931

100

0.409
  pilC Pseudomonas stutzeri DSM 10701

41.162

97.059

0.4
  pilG Neisseria gonorrhoeae MS11

40.299

98.529

0.397
  pilG Neisseria meningitidis 44/76-A

39.95

98.775

0.395
  pilC Legionella pneumophila strain ERS1305867

39.651

98.284

0.39

Multiple sequence alignment