Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CEJ46_RS02790 | Genome accession | NZ_CP022101 |
| Coordinates | 563600..564025 (-) | Length | 141 a.a. |
| NCBI ID | WP_010319532.1 | Uniprot ID | - |
| Organism | Vibrio anguillarum strain JLL237 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 558600..569025
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEJ46_RS02770 (CEJ46_02770) | coaE | 559114..559722 (-) | 609 | WP_064624393.1 | dephospho-CoA kinase | - |
| CEJ46_RS02775 (CEJ46_02775) | pilD | 559713..560594 (-) | 882 | WP_088720881.1 | prepilin peptidase | Machinery gene |
| CEJ46_RS02780 (CEJ46_02780) | pilC | 560633..561859 (-) | 1227 | WP_047688859.1 | type II secretion system F family protein | Machinery gene |
| CEJ46_RS02785 (CEJ46_02785) | pilB | 561902..563590 (-) | 1689 | WP_088720882.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CEJ46_RS02790 (CEJ46_02790) | pilA | 563600..564025 (-) | 426 | WP_010319532.1 | pilin | Machinery gene |
| CEJ46_RS02795 (CEJ46_02795) | nadC | 564284..565171 (-) | 888 | WP_017043701.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| CEJ46_RS02800 (CEJ46_02800) | ampD | 565296..565847 (+) | 552 | WP_232471667.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CEJ46_RS02805 (CEJ46_02805) | fldB | 565869..566387 (-) | 519 | WP_088720885.1 | flavodoxin FldB | - |
| CEJ46_RS02810 (CEJ46_02810) | xerD | 566540..567448 (+) | 909 | WP_013857679.1 | site-specific tyrosine recombinase XerD | - |
| CEJ46_RS02815 (CEJ46_02815) | - | 567462..568235 (+) | 774 | WP_013857678.1 | thioredoxin fold domain-containing protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14583.69 Da Isoelectric Point: 7.7777
>NTDB_id=236770 CEJ46_RS02790 WP_010319532.1 563600..564025(-) (pilA) [Vibrio anguillarum strain JLL237]
MNTNKKTKQSGFTLIELMIVVAIIGVLSAIAVPAYKNYVAKSEVASAIATMKALITPAEITYQDKGILAAATEPTDLGIS
AGSNSLGTISIPSNNNIKFEFGEKSAINGAYLTFSRDANTGWSCKATSGGVSNMPAIDGCS
MNTNKKTKQSGFTLIELMIVVAIIGVLSAIAVPAYKNYVAKSEVASAIATMKALITPAEITYQDKGILAAATEPTDLGIS
AGSNSLGTISIPSNNNIKFEFGEKSAINGAYLTFSRDANTGWSCKATSGGVSNMPAIDGCS
Nucleotide
Download Length: 426 bp
>NTDB_id=236770 CEJ46_RS02790 WP_010319532.1 563600..564025(-) (pilA) [Vibrio anguillarum strain JLL237]
ATGAACACAAATAAGAAAACGAAACAAAGTGGTTTTACCTTAATTGAATTGATGATTGTGGTAGCGATTATTGGCGTACT
CTCTGCGATTGCCGTTCCTGCTTATAAAAACTATGTAGCTAAAAGTGAAGTAGCTTCAGCAATAGCAACAATGAAAGCCT
TAATTACCCCTGCCGAGATTACCTATCAAGACAAAGGTATTTTGGCCGCTGCTACTGAACCTACTGACTTAGGAATATCA
GCAGGTTCAAACAGTTTAGGAACCATATCCATCCCAAGTAATAACAATATAAAATTCGAATTTGGAGAAAAAAGTGCAAT
CAACGGTGCATACCTAACATTCTCACGAGATGCAAATACAGGTTGGTCATGTAAAGCAACTTCTGGTGGTGTAAGTAATA
TGCCAGCAATTGATGGCTGCTCATAA
ATGAACACAAATAAGAAAACGAAACAAAGTGGTTTTACCTTAATTGAATTGATGATTGTGGTAGCGATTATTGGCGTACT
CTCTGCGATTGCCGTTCCTGCTTATAAAAACTATGTAGCTAAAAGTGAAGTAGCTTCAGCAATAGCAACAATGAAAGCCT
TAATTACCCCTGCCGAGATTACCTATCAAGACAAAGGTATTTTGGCCGCTGCTACTGAACCTACTGACTTAGGAATATCA
GCAGGTTCAAACAGTTTAGGAACCATATCCATCCCAAGTAATAACAATATAAAATTCGAATTTGGAGAAAAAAGTGCAAT
CAACGGTGCATACCTAACATTCTCACGAGATGCAAATACAGGTTGGTCATGTAAAGCAACTTCTGGTGGTGTAAGTAATA
TGCCAGCAATTGATGGCTGCTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
54.861 |
100 |
0.56 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.419 |
100 |
0.411 |
| pilA | Vibrio cholerae strain A1552 |
37.419 |
100 |
0.411 |
| pilA | Vibrio cholerae C6706 |
37.419 |
100 |
0.411 |
| pilA | Pseudomonas aeruginosa PAK |
42.424 |
93.617 |
0.397 |