Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CEQ32_RS14045 Genome accession   NZ_CP022089
Coordinates   3121592..3122863 (+) Length   423 a.a.
NCBI ID   WP_047534376.1    Uniprot ID   -
Organism   Shewanella sp. FDAARGOS_354     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3116592..3127863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ32_RS23285 (CEQ32_14010) - 3117559..3117972 (+) 414 WP_088586230.1 pilin -
  CEQ32_RS14035 (CEQ32_14015) - 3118020..3119012 (-) 993 WP_192959124.1 O-antigen ligase family protein -
  CEQ32_RS14040 (CEQ32_14020) pilB 3119764..3121473 (+) 1710 WP_088586232.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CEQ32_RS14045 (CEQ32_14025) pilC 3121592..3122863 (+) 1272 WP_047534376.1 type II secretion system F family protein Machinery gene
  CEQ32_RS14050 (CEQ32_14030) pilD 3122998..3123924 (+) 927 WP_088586233.1 prepilin peptidase Machinery gene
  CEQ32_RS14055 (CEQ32_14035) coaE 3124056..3124673 (+) 618 WP_047534370.1 dephospho-CoA kinase -
  CEQ32_RS14060 (CEQ32_14040) zapD 3124666..3125400 (+) 735 WP_037413632.1 cell division protein ZapD -
  CEQ32_RS14065 (CEQ32_14045) yacG 3125510..3125719 (+) 210 WP_037413634.1 DNA gyrase inhibitor YacG -
  CEQ32_RS14070 (CEQ32_14050) mutT 3125806..3126201 (+) 396 WP_037413635.1 8-oxo-dGTP diphosphatase MutT -
  CEQ32_RS14075 (CEQ32_14055) - 3126345..3126881 (+) 537 WP_088586234.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46038.37 Da        Isoelectric Point: 10.2770

>NTDB_id=236582 CEQ32_RS14045 WP_047534376.1 3121592..3122863(+) (pilC) [Shewanella sp. FDAARGOS_354]
MATATTVKKPRPKKIEQKSQPKIYTFEWKGVNRDGQKTSGELRGASAAEVRSKLKSQGVNPKTVRKQSAALFKLGDAKIT
PMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLQISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQIVRDRVDEVILKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=236582 CEQ32_RS14045 WP_047534376.1 3121592..3122863(+) (pilC) [Shewanella sp. FDAARGOS_354]
ATGGCTACGGCAACCACAGTAAAAAAGCCTCGCCCAAAAAAGATTGAGCAAAAAAGCCAACCTAAAATTTATACCTTTGA
ATGGAAAGGTGTTAATCGCGACGGTCAAAAAACCAGTGGCGAACTGAGGGGGGCCTCTGCTGCTGAGGTTCGTAGCAAGT
TAAAATCTCAAGGGGTAAATCCTAAAACCGTTCGCAAACAATCGGCCGCCTTATTTAAATTAGGCGATGCCAAAATTACC
CCTATGGATATTGCGATGGTAACTCGGCAAATTGCCACCATGCTTGCCGCTGGGGTGCCATTAGTGACTACCATTGAACT
ACTGGGTCGCGGCCATGAAAAAGCAAAAATGCGTGAGCTGTTAGCGACAATTCTATCGGAGATCCAATCAGGTATTCCCT
TATCCGATGCTTTACGCCCCCACCGACGCTATTTTGATGATCTCTATGTTGACTTAGTTGCTGCGGGTGAACATTCAGGC
TCACTCGATGTAGTGTTTGATCGTATTGCGACCTACCGTGAAAAATCTGAAGCATTAAAATCTAAGATTAAAAAAGCCAT
GTTTTATCCGGCAGCAGTAGTAATAGTCGCTATTTTAGTAACAGCACTATTATTACTGTTTGTGGTGCCACAATTTGAAG
ATATTTTTAAGGGCTTTGGGGCCGAGTTGCCTGCTTTTACCCAATTAGTGCTGCAAATCTCCCGCGGCTTACAATCCTCT
TGGTATATCTTTTTGGGTGCCATAGTGGCTGGCGTATTTTTATTTGTGAGGGCTCATAGGAACTCACAAATCGTGAGAGA
CAGAGTTGACGAAGTCATCTTAAAAATTCCAGCTATTGGTCCCATTCTACACAAAGGCGCTATGGCGCGTTTTGCCCGTA
CCTTAGCCACCACCTTTGCCGCTGGTGTCCCCTTAATCGACGGCTTAGAATCAGCCGCAGGGGCATCGGGCAATGCGGTA
TACCGTAAAGCCATCTTAAAAATCCGCCAGGAAGTGATGGCCGGGATGCAAATGAACGTGGCAATGCGAACCACAGGGCT
GTTCCCCGATATGCTGATCCAAATGGTGATGATTGGCGAAGAATCAGGCTCTCTTGATAATATGCTTAATAAAGTTTCAA
CTATCTATGAGATGCAAGTAGACGACGCTGTCGATGGTTTATCCAGCCTAATTGAACCTATCATGATGGTGGTCATTGGT
ACTGTTGTTGGTGGTCTTATTGTCGCTATGTATTTACCCATCTTCCAAATGGGTAAAGTGGTTGGTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Legionella pneumophila strain ERS1305867

50.248

95.508

0.48
  pilC Acinetobacter baumannii D1279779

50.503

94.09

0.475
  pilC Acinetobacter baylyi ADP1

50.378

93.853

0.473
  pilC Vibrio cholerae strain A1552

48.622

94.326

0.459
  pilC Vibrio campbellii strain DS40M4

44.988

96.69

0.435
  pilG Neisseria meningitidis 44/76-A

41.791

95.035

0.397
  pilG Neisseria gonorrhoeae MS11

41.791

95.035

0.397

Multiple sequence alignment