Detailed information NTG0236583

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CEQ32_RS14050
• Genome accession: NZ_CP022089
• Coordinates: 3122998..3123924 (+)
• Length: 308 a.a.
• NCBI ID: WP_088586233.1
• Uniprot ID: -
• Organism: Shewanella sp. FDAARGOS_354
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3117998..3128924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEQ32_RS14035 (CEQ32_14015)	-	3118020..3119012 (-)	993	WP_192959124.1	O-antigen ligase family protein	-
CEQ32_RS14040 (CEQ32_14020)	pilB	3119764..3121473 (+)	1710	WP_088586232.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CEQ32_RS14045 (CEQ32_14025)	pilC	3121592..3122863 (+)	1272	WP_047534376.1	type II secretion system F family protein	Machinery gene
CEQ32_RS14050 (CEQ32_14030)	pilD	3122998..3123924 (+)	927	WP_088586233.1	prepilin peptidase	Machinery gene
CEQ32_RS14055 (CEQ32_14035)	coaE	3124056..3124673 (+)	618	WP_047534370.1	dephospho-CoA kinase	-
CEQ32_RS14060 (CEQ32_14040)	zapD	3124666..3125400 (+)	735	WP_037413632.1	cell division protein ZapD	-
CEQ32_RS14065 (CEQ32_14045)	yacG	3125510..3125719 (+)	210	WP_037413634.1	DNA gyrase inhibitor YacG	-
CEQ32_RS14070 (CEQ32_14050)	mutT	3125806..3126201 (+)	396	WP_037413635.1	8-oxo-dGTP diphosphatase MutT	-
CEQ32_RS14075 (CEQ32_14055)	-	3126345..3126881 (+)	537	WP_088586234.1	thioredoxin family protein	-
CEQ32_RS14080 (CEQ32_14060)	-	3126956..3127882 (-)	927	WP_088586235.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34385.92 Da
• Isoelectric Point: 7.3229

>NTDB_id=236583 CEQ32_RS14050 WP_088586233.1 3122998..3123924(+) (pilD) [Shewanella sp. FDAARGOS_354]
MTEFFTLLGHTFDQAPWLFICLSFVFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHADVVKQVGLEKLNKPIDNY
PEKYNLVVPGSACPKCKTAIKPWHNLPIMGWLMLRGKCAACSAPISARYPIIELITGLLIATLAWHFGPSGQFVFAAVLT
FVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTNPTDAIIGAAVGYLSLWSIFWLFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGALVGITLILTKRNQLANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=236583 CEQ32_RS14050 WP_088586233.1 3122998..3123924(+) (pilD) [Shewanella sp. FDAARGOS_354]
ATGACTGAATTTTTCACTTTATTGGGTCACACTTTTGACCAAGCACCATGGCTTTTTATCTGCTTAAGTTTTGTGTTTGC
CGCAACTATTGGCAGTTTTTTAAATGTGGTTATCCATCGTTTTCCGGTGATGATGAAGCGCGAATGGCAACAGGAATGTA
ATCAGTATCTGCAGGAATATCATGCAGATGTAGTCAAACAAGTCGGTTTAGAAAAGCTTAACAAGCCTATAGATAACTAT
CCTGAAAAATACAATCTAGTGGTACCAGGTTCTGCCTGCCCTAAATGTAAAACCGCCATCAAGCCTTGGCATAATTTGCC
GATTATGGGCTGGTTAATGCTCAGAGGAAAATGCGCAGCCTGCAGCGCGCCAATCTCCGCCCGTTACCCAATCATTGAAT
TGATAACTGGTTTACTCATTGCTACATTGGCTTGGCATTTTGGCCCCAGCGGGCAATTTGTGTTTGCTGCAGTATTAACC
TTTGTATTGATTGCGCTCACCGGAATCGATCTGGATGAAATGCTGCTTCCCGACCAGATGACACTTCCCCTGCTATGGTT
AGGACTACTCATTAACCTCAACCATACCTTTACCAACCCAACCGATGCGATTATTGGTGCCGCAGTAGGCTATTTAAGTT
TATGGTCGATTTTTTGGCTATTTAAGCTGTTAACCGGTAAAGAAGGCATGGGCTATGGTGACTTTAAACTGCTTGCCGTA
TTTGGTGCTTGGCTTGGTTGGCAAATGTTGCCACTGGTGATTTTACTTTCATCCTTAGTGGGTGCCCTCGTAGGCATCAC
GCTGATCTTGACCAAACGTAATCAACTGGCAAATCCGATTCCCTTTGGTCCTTACATTGCCGCCGCAGGTTGGATCGCCC
TAATATGGGGTCAACCTATTGTGGATTGGTATTTAAGTACGTTATAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (158-266)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.701	95.455	0.494
pilD	Vibrio campbellii strain DS40M4	50	97.403	0.487
pilD	Acinetobacter nosocomialis M2	50.173	93.831	0.471
pilD	Acinetobacter baumannii D1279779	49.827	93.831	0.468
pilD	Neisseria gonorrhoeae MS11	44.637	93.831	0.419