Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MMP_RS03805 Genome accession   NC_005791
Coordinates   717504..719444 (-) Length   646 a.a.
NCBI ID   WP_011170671.1    Uniprot ID   Q6LZA2
Organism   Methanococcus maripaludis S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 712504..724444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMP_RS03775 (MMP0721) - 714028..714708 (+) 681 WP_011170665.1 ATP-binding protein -
  MMP_RS03780 (MMP0722) - 714749..715381 (+) 633 WP_011170666.1 4Fe-4S binding protein -
  MMP_RS03785 (MMP0723) - 715399..715743 (+) 345 WP_011170667.1 cupin domain-containing protein -
  MMP_RS03790 (MMP0724) - 715883..716317 (+) 435 WP_232500696.1 hypothetical protein -
  MMP_RS03795 (MMP0725) - 716325..716882 (-) 558 WP_011170669.1 YqhA family protein -
  MMP_RS03800 (MMP0726) - 717235..717468 (+) 234 WP_013998910.1 hypothetical protein -
  MMP_RS03805 (MMP0727) uvrB 717504..719444 (-) 1941 WP_011170671.1 excinuclease ABC subunit UvrB Machinery gene
  MMP_RS03810 (MMP0728) uvrC 719441..721024 (-) 1584 WP_011170672.1 excinuclease ABC subunit UvrC Machinery gene
  MMP_RS03815 (MMP0729) uvrA 721032..723887 (-) 2856 WP_011170673.1 excinuclease ABC subunit UvrA Machinery gene
  MMP_RS03820 (MMP0730) - 724013..724432 (-) 420 WP_011170674.1 EamA family transporter -

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 74764.94 Da        Isoelectric Point: 5.9636

>NTDB_id=23635 MMP_RS03805 WP_011170671.1 717504..719444(-) (uvrB) [Methanococcus maripaludis S2]
MSSPDFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEF
KEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEM
GFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDILRVEMFGDEIDRIYELDPKNMSKKHEI
DSFYMYPAKHFVIPEEDKKNAINSILKELDEWLPNLDMLKSHRLKQKTLYDIEMIEETGSCKGIENYSRHFENRKEGEPA
YCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELD
NSNQVVEQIIRPTGLLDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDTI
ERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAARNANSKVVLYAGKMTDSIKK
AVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISDVKHIPVADIPNVIVELEAEMYEAAEALEFEKAIKIRDTIAK
LKKKIK

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=23635 MMP_RS03805 WP_011170671.1 717504..719444(-) (uvrB) [Methanococcus maripaludis S2]
ATGAGTTCTCCCGATTTCAAGTTAAAAGCAGAGTTTAAACCAAAAGGGTCCCAGCTAGAAGCAATTGCAGGGCTGGTTAA
AGACCTTGAAAAAAATCCAGAAAAAAGTAAGCAGACACTGCTTGGTGTTACAGGTTCTGGAAAAACTTTTACTATTGCAA
ATGTTATTGAAAAAGTTCAAAAACCAACACTGGTAATTGCGCACAATAAAACACTTGCGGCACAACTTTATAATGAGTTT
AAAGAATTCTTTCCTGAAAATCGAGTAGAATATTTTGTTTCGTACTATGATTACTACCAGCCAGAATCATATATTCCACA
AAAAGATCAATATATTGAAAAGGATGCACAGATCAACCCGAAAATTGAGCAGATGCGTCTTCGTGCAACTTCTGCAATTC
TTTCGAGAAGGGACGTGATAATTGTTGCATCGGTTTCCTGCATATACGGTCTTGGAAATCCTGAACTTTTTAAAGAAATG
GGTTTTGAACTTAAAGTCGGAGAAAAAATCAAAAGATCTGACATTATTGAAAAATTAGTGGATATTCAATACGAAAGAAA
CGATATGGAATTAGTTCCAGGAAGATTTAGAGTAAAAGGCGATACATTAGATATTATTCCCGGATATCAGGACGATATTT
TAAGAGTTGAAATGTTTGGGGATGAAATAGATAGAATTTATGAATTGGATCCAAAAAACATGAGCAAAAAACATGAAATA
GATTCATTTTACATGTACCCTGCAAAACACTTCGTAATTCCTGAAGAAGATAAGAAAAATGCAATTAACTCCATTTTAAA
AGAATTAGATGAGTGGCTCCCAAATTTAGACATGTTAAAATCTCATCGGTTAAAACAAAAAACCCTATACGATATTGAAA
TGATAGAAGAAACTGGAAGCTGTAAGGGGATTGAAAATTATTCGAGGCACTTTGAAAATAGAAAAGAAGGAGAACCTGCA
TACTGCCTTTTAGACTATTTCCCAGAAGATTTTTTGATTGTAATTGATGAAAGCCACCAAACCATCCCACAAATTCGCGG
AATGTATAAAGGCGATAGATCAAGAAAACAGTCATTGATTGATTACGGTTTCAGGCTTCCAAGTGCATATGACAACCGCC
CACTTAAATTTGAAGAATTTAAAAAATACATGAATAATGTAATTTTTGTGTCAGCAACACCGGGCGAATACGAGTTAGAT
AACTCAAATCAAGTTGTAGAACAGATTATTCGGCCAACAGGATTGCTTGATCCAGAAGTTGAAATAAGACCGATTGAAAA
TCAGGTTGAAGATATCATAAAAGAAACTGAAAAAATGGTCGAAAAAGGAGAAAGGGTATTGATTACGACACTTACAAAGC
GTCTTGCAGAAGAATTAACAGAATATTTGGCAAAAAGAAATGTTAAAGCAAGATATCTACATTCTGACATAGATACCATT
GAAAGAACTGAAATTATTCGAAATTTAAGGCTTGGAAAATTCGACTGCCTCGTTGGAATAAATTTATTGAGAGAAGGTTT
AGACATTCCGGAAGTTGGATTCGTTGGAATACTCGATGCAGACAAAGAAGGGTTTTTGAGAAACGATAAAAGCCTGATTC
AAACCATTGGTCGAGCTGCAAGAAATGCAAACTCAAAAGTTGTGCTTTATGCTGGCAAAATGACCGATTCAATTAAAAAA
GCAGTTTCTGAAACTGAAAGAAGAAGAAAACTTCAAAAAGAACACAATGAAAAGCACAATATCACGCCTCAAACTATTGT
AAAACCGATAAGAGAAAAAGTAGTTGATATTTCCGATGTAAAACATATACCTGTAGCAGATATTCCAAATGTTATTGTAG
AACTTGAAGCTGAAATGTATGAAGCTGCAGAAGCGCTCGAATTTGAAAAAGCAATAAAAATAAGAGATACAATTGCAAAA
TTGAAGAAAAAAATCAAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(431-542)

UvrB interaction domain (UvrB_inter)

(163-251)

Ultra-violet resistance protein B (UvrB)

(549-591)

Type III restriction enzyme, res subunit (ResIII)

(12-122)

UvrB/uvrC motif (UVR)

(610-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6LZA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.215

100

0.557
  uvrB Streptococcus pneumoniae R6

55.061

100

0.556
  uvrB Streptococcus pneumoniae D39

55.061

100

0.556

Multiple sequence alignment