Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CEQ03_RS19535 Genome accession   NZ_CP022053
Coordinates   4164584..4165843 (-) Length   419 a.a.
NCBI ID   WP_049460357.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain FDAARGOS_325     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4159584..4170843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ03_RS19510 (CEQ03_19380) - 4160024..4160701 (+) 678 WP_005410804.1 response regulator transcription factor -
  CEQ03_RS19515 (CEQ03_19385) - 4160664..4162031 (+) 1368 WP_043034309.1 HAMP domain-containing sensor histidine kinase -
  CEQ03_RS19520 (CEQ03_19390) - 4162477..4162824 (+) 348 Protein_3803 hypothetical protein -
  CEQ03_RS19525 (CEQ03_19395) coaE 4163090..4163701 (-) 612 WP_049460355.1 dephospho-CoA kinase -
  CEQ03_RS19530 (CEQ03_19400) - 4163713..4164576 (-) 864 WP_049460356.1 A24 family peptidase -
  CEQ03_RS19535 (CEQ03_19405) pilC 4164584..4165843 (-) 1260 WP_049460357.1 type II secretion system F family protein Machinery gene
  CEQ03_RS19540 (CEQ03_19410) - 4166196..4166621 (+) 426 WP_088611172.1 pilin -
  CEQ03_RS19545 (CEQ03_19415) - 4166771..4167178 (+) 408 WP_049430266.1 pilin -
  CEQ03_RS19550 (CEQ03_19420) pilB 4167401..4169134 (+) 1734 WP_005410796.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CEQ03_RS19555 (CEQ03_19425) pilR 4169261..4170634 (-) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45890.34 Da        Isoelectric Point: 10.1071

>NTDB_id=236238 CEQ03_RS19535 WP_049460357.1 4164584..4165843(-) (pilC) [Stenotrophomonas maltophilia strain FDAARGOS_325]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPIKPKD
IAFFSRQMATMMKSGVPIVSSLDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLIAIGAAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=236238 CEQ03_RS19535 WP_049460357.1 4164584..4165843(-) (pilC) [Stenotrophomonas maltophilia strain FDAARGOS_325]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGTCGAAGCCGCTGTTCGGCGCTGCCGGCAGCCCGATCAAGCCGAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGTGTGCCGATCGTGTCGTCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGTACGAGG
CGATCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTTCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCGATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGCGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAATCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTCATCGCGATCGGTGCCGCGGTCGGTGCGATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGTGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TAACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAACAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.808

94.511

0.527
  pilC Acinetobacter baylyi ADP1

51.106

97.136

0.496
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baumannii D1279779

49.631

97.136

0.482
  pilG Neisseria gonorrhoeae MS11

45.137

95.704

0.432
  pilG Neisseria meningitidis 44/76-A

44.888

95.704

0.43
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

41.147

95.704

0.394
  pilC Thermus thermophilus HB27

37.811

95.943

0.363

Multiple sequence alignment